View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_8 (Length: 349)
Name: NF16916_low_8
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 27776990 - 27776660
Alignment:
| Q |
18 |
acatttcttcagattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776990 |
acatttcttcagattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaaca |
27776891 |
T |
|
| Q |
118 |
agaagatgaaacaaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776890 |
agaagatgaaacaaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaa |
27776791 |
T |
|
| Q |
218 |
tcagttttacctttactagaacaattaaaatatgctacaacttttggagctaaaaagtgttttaattccaaaattagggtttatacacctgattttaagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776790 |
tcagttttacctttactagaacaattaaaatatgctgcaacttttgtagctaaaaagtattttaattccaaaattagggtttatacacctgattttaagc |
27776691 |
T |
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| Q |
318 |
tatgttttgagcatttttgtattcatactgg |
348 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
27776690 |
tatgttttgagcatttttgtattcatactgg |
27776660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 19743351 - 19743024
Alignment:
| Q |
18 |
acatttcttcagattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaaca |
117 |
Q |
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||||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| | |
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| T |
19743351 |
acatttcttcagattctcaacgttcaaagtatcatcttaagcacactgttcgtacacacaaaggttcacaagatacttgttacaattcagtctttcaaaa |
19743252 |
T |
|
| Q |
118 |
agaagatgaaacaaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19743251 |
agaagatgaaacaaacaaaatcacaggagtatcactttcaaaagaactaatgagttcggctggttttgcacttaaagccaacatcacaacacttggaaaa |
19743152 |
T |
|
| Q |
218 |
tcagttttacctttactagaacaattaaaatatgctacaacttttggagctaaaaagtgttttaattccaaaattagggtttatacacctgattttaagc |
317 |
Q |
| |
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| ||| ||||||||||||||||||| || | || | ||||||||| | |||||| | |||||| |||| | | | |||||||||||||||||||| |
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| T |
19743151 |
tatgttctacctttactagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaataacaaagtcaagatttatacacctgattttaagt |
19743052 |
T |
|
| Q |
318 |
tatgttttgagcatttttgtattcatac |
345 |
Q |
| |
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| |||||||| || |||||| ||||||| |
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| T |
19743051 |
tgtgttttgaccacttttgtgttcatac |
19743024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 19796737 - 19797064
Alignment:
| Q |
18 |
acatttcttcagattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaaca |
117 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| | |
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| T |
19796737 |
acatttcttcagattctcaacgttcaaagtatcatcttaagcacactgttcgtacacacaaaggttcacaagatacttgttacaattcagtctttcaaaa |
19796836 |
T |
|
| Q |
118 |
agaagatgaaacaaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19796837 |
agaagatgaaacaaacaaaatcacaggagtatcactttcaaaagaactaatgagttcggctggttttgcacttaaagccaacatcacaacacttggaaaa |
19796936 |
T |
|
| Q |
218 |
tcagttttacctttactagaacaattaaaatatgctacaacttttggagctaaaaagtgttttaattccaaaattagggtttatacacctgattttaagc |
317 |
Q |
| |
|
| ||| ||||||||||||||||||| || | || | ||||||||| | |||||| | |||||| |||| | | | |||||||||||||||||||| |
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| T |
19796937 |
tatgttctacctttactagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaataacaaagtcaagatttatacacctgattttaagt |
19797036 |
T |
|
| Q |
318 |
tatgttttgagcatttttgtattcatac |
345 |
Q |
| |
|
| |||||||| || |||||| ||||||| |
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| T |
19797037 |
tgtgttttgaccacttttgtgttcatac |
19797064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 19672220 - 19671987
Alignment:
| Q |
29 |
gattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaacaagaagatgaaa |
128 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| |||||||||||| |
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| T |
19672220 |
gattctcaccgttcaaaatatcaccttaaacacactgttcgtacacacaaaggttcgcaagatacttgttacaattcagtctttcaaaaagaagatgaaa |
19672121 |
T |
|
| Q |
129 |
caaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacc |
228 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||| |
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| T |
19672120 |
caaacaaaatcacaggagtatcactttcaaaagacctaatgagttcagctggttttgcccttaaagccaacatcccaacacttggaaaatttgttttacc |
19672021 |
T |
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| Q |
229 |
tttactagaacaattaaaatatgctacaactttt |
262 |
Q |
| |
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|||| ||||||||| ||||||| | |||||||| |
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| T |
19672020 |
attaccagaacaattcaaatatgtttcaactttt |
19671987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 19540296 - 19539981
Alignment:
| Q |
29 |
gattctaaccgttcaaaatatctccttaaacacactgttcgtacacacaaaggttcacaagataattgttacaattcaatccttcaacaagaagatgaaa |
128 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| |
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| T |
19540296 |
gattctcaccgttcaaaatatcaccttaaacacactgttcctacacacaaaggttcacaagatacttgttacaattcagtctttcaaaaagaagatgaaa |
19540197 |
T |
|
| Q |
129 |
caaacaaaatcacaggaatttcactctcaaaacaactaatgagttcagctggttttgcacttaaagcaaacatcacaacacttggaaaatcagttttacc |
228 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||| | || |
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|
| T |
19540196 |
caaacaaaatcacaggagtatcactttcaaaa-gcctaatgagttcggctggtattgcacttaaagccaacatcacaacacttggaaaatatgttctgcc |
19540098 |
T |
|
| Q |
229 |
tttactagaacaattaaaatatgctacaacttttggagctaaaaagtgttttaattccaaaattagggtttatacacctgattttaagctatgttttgag |
328 |
Q |
| |
|
||||||||||||||| || | || | ||||||||| | |||||| | ||||| |||| | | | |||||||||||||||||||| | |||||||| |
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|
| T |
19540097 |
tttactagaacaattcaagtttgtttcaacttttgttgttaaaaaatactttaacaacaaagtgaagatttatacacctgattttaagttgtgttttgac |
19539998 |
T |
|
| Q |
329 |
catttttgtattcatac |
345 |
Q |
| |
|
|| |||||| ||||||| |
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|
| T |
19539997 |
cacttttgtgttcatac |
19539981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 26453320 - 26453370
Alignment:
| Q |
298 |
ttatacacctgattttaagctatgttttgagcatttttgtattcatactgg |
348 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26453320 |
ttatatacctgattttaagcttgcttttgagcatttttgtattcatgctgg |
26453370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 19671952 - 19671904
Alignment:
| Q |
297 |
tttatacacctgattttaagctatgttttgagcatttttgtattcatac |
345 |
Q |
| |
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|||||||||||||||||||| | |||||||| || |||||| ||||||| |
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|
| T |
19671952 |
tttatacacctgattttaagttgtgttttgaccacttttgtgttcatac |
19671904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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