View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_9 (Length: 336)
Name: NF16916_low_9
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 184 - 327
Target Start/End: Original strand, 7037121 - 7037264
Alignment:
| Q |
184 |
gaaaagaattatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccgctgggacattgatattttatgaa |
283 |
Q |
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| T |
7037121 |
gaaaagatttatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccactgggacattgatattttatgaa |
7037220 |
T |
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| Q |
284 |
cttcgatagtatataactactactttcatattttggggtctgtg |
327 |
Q |
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| T |
7037221 |
cttcgatagtatataactactactttcatattctggggtctgtg |
7037264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7036933 - 7037012
Alignment:
| Q |
1 |
gtaagtatttagaaaagtagtaactaagctaagtcaaatgaga--agagcaatttcaaatcattcataatttaatataat |
78 |
Q |
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| T |
7036933 |
gtaagtatttagaaaagtagtaactaagctaagtcaaatgagaatagagcaatttcaaatcattcataatttaatataat |
7037012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 7036999 - 7037058
Alignment:
| Q |
125 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
184 |
Q |
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| T |
7036999 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
7037058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 7036907 - 7036955
Alignment:
| Q |
79 |
tttcctacacaaataaaatacaaacagtaagtatttagaaaagtagtaa |
127 |
Q |
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| T |
7036907 |
tttcctacacaaataaaatacaaccagtaagtatttagaaaagtagtaa |
7036955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 1379282 - 1379333
Alignment:
| Q |
79 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
129 |
Q |
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| T |
1379282 |
tttcctacacaaataaaatacaaacagttaagtatttagaaaagtaataatt |
1379333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 7313035 - 7313086
Alignment:
| Q |
79 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
129 |
Q |
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| T |
7313035 |
tttcctacacaaataaaatacaaacagttaaatatttagaaaagtaataatt |
7313086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 29377565 - 29377616
Alignment:
| Q |
130 |
taatataatcacagttcatgcatcttttaatacattcatttctatctagtta |
181 |
Q |
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| T |
29377565 |
taatataatcacaattcatacatattttcatacattcctttctatctagtta |
29377616 |
T |
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