View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_high_2 (Length: 402)
Name: NF16917_high_2
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 3810453 - 3810097
Alignment:
| Q |
12 |
atcatcaattgacttcattgattctttctgctgtaaagactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttga |
111 |
Q |
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| T |
3810453 |
atcatcaattgacttcattgattctttctgctgtaaatactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggt--- |
3810357 |
T |
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| Q |
112 |
caaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattgtcttgttgaatgaaaa |
211 |
Q |
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| T |
3810356 |
----------------caaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattctcttgttgaatgaaaa |
3810273 |
T |
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| Q |
212 |
ttgtcttccctacatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttat |
311 |
Q |
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| T |
3810272 |
ttgtcttccctacatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttat |
3810173 |
T |
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| Q |
312 |
aggtttcctttctatagtccctgcagctctgttgacactgcttcttctagctggctgttcatacacaaatggaaat |
387 |
Q |
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| T |
3810172 |
aggtttcctttctatagtccctgcagctctgttgacactgcttcttctagctggctgttcatacacaaatggaaat |
3810097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 1329651 - 1329564
Alignment:
| Q |
52 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
139 |
Q |
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| T |
1329651 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
1329564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 45489304 - 45489216
Alignment:
| Q |
70 |
cccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
158 |
Q |
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| T |
45489304 |
cccaaatccaaaacattcaaatcgggagagttaggtggttgacatatcaatcgaatgtcaaacccaccttcagaagctgctctacaaaa |
45489216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 42539903 - 42539990
Alignment:
| Q |
52 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
139 |
Q |
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| T |
42539903 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
42539990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 8187209 - 8187133
Alignment:
| Q |
82 |
acattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
158 |
Q |
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| T |
8187209 |
acattcaaatcgggagaattaggtcgttaacatatcaatcgaatgtcaaacccaccttcaaaagctgctctacaaaa |
8187133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 40286926 - 40286990
Alignment:
| Q |
64 |
aaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtc |
128 |
Q |
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| T |
40286926 |
aaaaagcctaaatccaatacgttcaaatcgggagaattaggaggttgaaaagtcaaacgaatgtc |
40286990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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