View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_1 (Length: 577)
Name: NF16917_low_1
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 4775068 - 4775622
Alignment:
| Q |
1 |
agattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctccttttatataaattgtctcgagcaggaacat |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |
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| T |
4775068 |
agattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctccttttaaataaattgtctctagcaggaacat |
4775167 |
T |
|
| Q |
101 |
gattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggagtagagttctgaaacacctttgttacttt |
200 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775168 |
gattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggagtagagttctgaaacacctttgttacttt |
4775267 |
T |
|
| Q |
201 |
attacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccacctgcaatgt---------atacgttctg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
4775268 |
attacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccacctgcgatgtataggataaatacgttctg |
4775367 |
T |
|
| Q |
292 |
ttatattcaagtcaatagaa---aatgttaacatttgtgcggccatatatacatataatacaatgatgaattatgctaagatcatggaacagtcaactat |
388 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4775368 |
ttatattcaagtcaatagaaaataatgttaacatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactat |
4775467 |
T |
|
| Q |
389 |
actaaatggctaattactttgggatatgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacac |
488 |
Q |
| |
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| T |
4775468 |
acta---------------tgggatatgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacac |
4775552 |
T |
|
| Q |
489 |
gccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaagtgatgccgtaccgagga |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775553 |
gccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaagtgatgccgtaccgagga |
4775622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 263
Target Start/End: Original strand, 29552984 - 29553195
Alignment:
| Q |
61 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
160 |
Q |
| |
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||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
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| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
|
| Q |
161 |
gaac---------atgaggagtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaat |
251 |
Q |
| |
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|||| |||||||| |||||||| || ||| | | ||||||| | |||||| ||||| ||||||| ||||| | | ||||||||||||| |
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| T |
29553084 |
gaacctgagaattctgaggagtggagttctgcaaaccctccatcaatttattatacgcattgctaactgtgtaactctgagaagagtgtaaatgccaaat |
29553183 |
T |
|
| Q |
252 |
ccatctatcctc |
263 |
Q |
| |
|
|||||||||||| |
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| T |
29553184 |
ccatctatcctc |
29553195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 414 - 558
Target Start/End: Original strand, 43060836 - 43060980
Alignment:
| Q |
414 |
atgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatc |
513 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
43060836 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagttaatactcctacacgcccgctcaagatggaggtatcatc |
43060935 |
T |
|
| Q |
514 |
aataactccaatcttgtctttaaggaagtgatgccgtaccgagga |
558 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43060936 |
aataactccaatcttgtctttaaggaagtgatgtcgtaccgagga |
43060980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
64 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
163 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
|
| Q |
164 |
c |
164 |
Q |
| |
|
| |
|
|
| T |
17173614 |
c |
17173614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 43060749 - 43060807
Alignment:
| Q |
287 |
ttctgttatattcaagtcaatagaaaatgttaacatttgtgcggccatatatacatata |
345 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| || ||||||| ||||| |
|
|
| T |
43060749 |
ttctgttgtattcaagtcaatagaaaatattaacatttgtgtggtaatatatatatata |
43060807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 319 - 487
Target Start/End: Original strand, 448506 - 448677
Alignment:
| Q |
319 |
acatttgtgcggccatatatacatataatacaatgatgaattatgctaagatcatggaacagtcaactatactaaatggctaattactttgggatatgat |
418 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||| ||||| | |||||||| |
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| T |
448506 |
acatttgtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgat |
448605 |
T |
|
| Q |
419 |
ttccatttacagatattattacaaccattattctttgatttggtcaatgc---ttaagttaatactcctaca |
487 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
448606 |
ttccatttactgatattattacacccatcattatttgatttggtcaatgctaattaagttaatactcctaca |
448677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
64 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
163 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
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| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
|
| Q |
164 |
c |
164 |
Q |
| |
|
| |
|
|
| T |
38397707 |
c |
38397707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 540
Target Start/End: Original strand, 42019449 - 42019520
Alignment:
| Q |
469 |
ttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaa |
540 |
Q |
| |
|
|||||| ||||||||| || |||||| || | |||| |||| |||| |||||||||||||||||||||||| |
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|
| T |
42019449 |
ttaagtaaatactcctttactccccctgaaaatggagttatcttcaagaactccaatcttgtctttaaggaa |
42019520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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