View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_10 (Length: 285)
Name: NF16917_low_10
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 32681130 - 32680984
Alignment:
| Q |
71 |
ataacaagttctagatttttacttctaaggcgaaaagtataagcacaaatagttctatgtagcttattcgatgatgttttgtgttgccatcgaaattttc |
170 |
Q |
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| T |
32681130 |
ataacaagttgtagatttttacttctaaggtgaaaagtataagcacaaatagttctatgtagcttattcgatgatgttttgtgttgccattgaaattttc |
32681031 |
T |
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| Q |
171 |
ttttctatc----tattaccatgtcctattgttatccttttcattat |
213 |
Q |
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| T |
32681030 |
ttttctatctatatattaccatgtcctattgttatccttttcattat |
32680984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 32680753 - 32680695
Alignment:
| Q |
212 |
atgctatgaattatgttgagccttgacatgtatgaagcagtcttatgttgaatatatat |
270 |
Q |
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| T |
32680753 |
atgctatgaattatgttgagccttgacatgtatgaagcagtcttatgttgaatatatat |
32680695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32681398 - 32681342
Alignment:
| Q |
1 |
aatgaaatgagaaatgtgataatgtcatgtgtactttttatttgacgcaaaccaaat |
57 |
Q |
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| T |
32681398 |
aatgaaatgagaaatgtgataatatcatgtgtactttttatttgacgcaaaccaaat |
32681342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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