View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_12 (Length: 247)
Name: NF16917_low_12
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_12 |
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| [»] scaffold0154 (2 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 7699 - 7623
Alignment:
| Q |
12 |
agagatatagaaagagagaaagatagagtcagcaaagcagaagtcaactacttttgtcgtccaacatctgccaagtc |
88 |
Q |
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| T |
7699 |
agagatatagaaagagagaaagatagagtcagcaaagcagaagtcaactacttttgtcgtccaacgtctgccaagtc |
7623 |
T |
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Target: scaffold0154; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 7401 - 7354
Alignment:
| Q |
179 |
ttaaacatgaaatacacaaatgttaggaaattatttgctaaagattaa |
226 |
Q |
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| T |
7401 |
ttaaacatgaaatacgcaaatgttaagaaattatttgataaatattaa |
7354 |
T |
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