View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_2 (Length: 555)
Name: NF16917_low_2
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 196 - 546
Target Start/End: Original strand, 34122233 - 34122584
Alignment:
| Q |
196 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtgcaaacattgtttgaaca |
295 |
Q |
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| T |
34122233 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtgcaaacattgtttgaaca |
34122332 |
T |
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| Q |
296 |
ttgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagagaatcgtcgtccattgatg |
395 |
Q |
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| T |
34122333 |
ttgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagagaatcgtcgtccattgatg |
34122432 |
T |
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| Q |
396 |
ttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttctagagttaagt |
495 |
Q |
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| T |
34122433 |
ttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttctagagttaagt |
34122532 |
T |
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| Q |
496 |
ttccac-ggtttcaaacttcattattcttaaagcctcttagcgatgatgatg |
546 |
Q |
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| T |
34122533 |
ttccacgggtttcaaacttcattattcttaaagcctcttagcgatgatgatg |
34122584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 179 - 544
Target Start/End: Original strand, 34110461 - 34110820
Alignment:
| Q |
179 |
gatatttaagaatcttgtttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtg |
278 |
Q |
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| T |
34110461 |
gatatttaagaatcttatttgtttgtttggactaggtaaatttggggaaaatatattgttcttcactgtgtcaaaaattccaaatttgaagaacattgtg |
34110560 |
T |
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| Q |
279 |
caaacattgtttgaacattgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagaga |
378 |
Q |
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| T |
34110561 |
cagacattatttcgacattgtggacatgacgagccttgcctcatagacgacgatgatgcagttaaacacttgagaagtttgctgaccaaaattggggaaa |
34110660 |
T |
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| Q |
379 |
atcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgat |
478 |
Q |
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| T |
34110661 |
---gttgtccaatgatgttggttctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgat |
34110757 |
T |
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| Q |
479 |
aacttctagagttaagtttccacggtttcaaacttcattattcttaaagcctcttagcgatgatga |
544 |
Q |
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| T |
34110758 |
aacttctagagttgagtttccacggttt---agttcactattcttaaagccgctcagagatgatga |
34110820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 34122082 - 34122230
Alignment:
| Q |
1 |
tgatcttcgtatttgtgttagtacttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcacaaatcattg |
100 |
Q |
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| T |
34122082 |
tgatcttcgtatttgtgttagtacttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcagaaatcattg |
34122181 |
T |
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| Q |
101 |
tggtcgcgtcgtgatatttgatattattgaaaatcatgatatagcttat |
149 |
Q |
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| T |
34122182 |
tggtcgcgtcgtgatatttgatattattgaaaatcatgatatagcttat |
34122230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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