View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_6 (Length: 358)
Name: NF16917_low_6
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 11339306 - 11339634
Alignment:
| Q |
13 |
gacatcatctcacccaaatcactctaagtcaaatttttgtctccaccaccgcttcaaactgccaaagcgctgccactttatcattcatggttgtttcaca |
112 |
Q |
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| T |
11339306 |
gacatcacctcacccaaatcactctaagtcaaatttt-gtctccaccaccgcttcaaactgccaaagcgctgccgctttatcattcatggttgtttcaca |
11339404 |
T |
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| Q |
113 |
atggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgttaataagtgataataatatcta |
212 |
Q |
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| T |
11339405 |
atggtgtttttatagctcccaaacctgaaaacaacttcaagtggtatttttatttttcagaacaaaatttgacagtattaataagtgataataatatgta |
11339504 |
T |
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| Q |
213 |
agtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctatttttagatgaggttatgtttttgcagtct |
312 |
Q |
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| T |
11339505 |
agttccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttataaaaaaact-tttttttagatgaggttatgtttttgcagtcc |
11339603 |
T |
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| Q |
313 |
agtgagacatttataactgatttgtaaaaca |
343 |
Q |
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| T |
11339604 |
agtgagacatttataactgatttgtaaaaca |
11339634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 343
Target Start/End: Original strand, 43378810 - 43379053
Alignment:
| Q |
92 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
191 |
Q |
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| T |
43378810 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt |
43378907 |
T |
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| Q |
192 |
aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttat----nnnnnnnnnctattttt |
287 |
Q |
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| T |
43378908 |
aataagtgataatagtatgtaagtcccttaaaac----------tgaattatattcatcggttctaagatgaatcttataaaaaaaaatgttttttttta |
43378997 |
T |
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| Q |
288 |
agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaaca |
343 |
Q |
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| T |
43378998 |
agatgaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaaca |
43379053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 343
Target Start/End: Original strand, 13207583 - 13207827
Alignment:
| Q |
92 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
191 |
Q |
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| T |
13207583 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt |
13207680 |
T |
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| Q |
192 |
aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctattttt---- |
287 |
Q |
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| T |
13207681 |
aataagtgataatagtatgtaagtcccttaaaac----------tgaattatattcatctgttctaagatgaatcttataaaaaaaattttttttttttt |
13207770 |
T |
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| Q |
288 |
-agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaaca |
343 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
13207771 |
aagattaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaaca |
13207827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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