View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16917_low_7 (Length: 307)
Name: NF16917_low_7
Description: NF16917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16917_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 33790904 - 33791189
Alignment:
| Q |
18 |
caatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgt |
117 |
Q |
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| T |
33790904 |
caatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgt |
33791003 |
T |
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| Q |
118 |
aagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagat |
217 |
Q |
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| T |
33791004 |
aagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagat |
33791103 |
T |
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| Q |
218 |
tcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
303 |
Q |
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| T |
33791104 |
tctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
163 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
262 |
Q |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
263 |
agacgtgatggatta |
277 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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