View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16918_high_3 (Length: 281)
Name: NF16918_high_3
Description: NF16918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16918_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 37280614 - 37280496
Alignment:
| Q |
156 |
taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaaatcat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37280614 |
taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaaatcat |
37280515 |
T |
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| Q |
256 |
tggtatcaaacactcttac |
274 |
Q |
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| T |
37280514 |
tggtatcaaacactcttac |
37280496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 37280765 - 37280695
Alignment:
| Q |
11 |
agcaaaggcaagaccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga |
81 |
Q |
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| T |
37280765 |
agcataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga |
37280695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 37276794 - 37276676
Alignment:
| Q |
156 |
taaaggaatgttggtgggttggagtattcgtaggaaagggttcataatatacataaaattattacagttcaaaggtattccaaaacatgaggaaaatcat |
255 |
Q |
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| T |
37276794 |
taaagaaatgttggtggattggagtagtcgtaggaaatgattgataatatacataaaattataatagttcaaagggattccgaagtgtgaggaaagtcgt |
37276695 |
T |
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| Q |
256 |
tggtatcaaacactcttac |
274 |
Q |
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|||||||||||| |||||| |
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| T |
37276694 |
tggtatcaaacattcttac |
37276676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 37276916 - 37276846
Alignment:
| Q |
11 |
agcaaaggcaagaccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga |
81 |
Q |
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| T |
37276916 |
agcataggcaaggccaatcatggctaacattacaagggctagaataacaacatgccttgaatgtgccatga |
37276846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 37264966 - 37264896
Alignment:
| Q |
11 |
agcaaaggcaagaccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga |
81 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||| |
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| T |
37264966 |
agcataggcgagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga |
37264896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 37261193 - 37261133
Alignment:
| Q |
11 |
agcaaaggcaagaccaatcatggccaacattacaagggccagaataacaacatgccttgaa |
71 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
37261193 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaa |
37261133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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