View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_11 (Length: 382)
Name: NF16919_high_11
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 43287305 - 43286951
Alignment:
| Q |
17 |
agataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattactataca |
116 |
Q |
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| T |
43287305 |
agataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattactataca |
43287206 |
T |
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| Q |
117 |
ctctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaaactacaatgattaaattaaatggacaaacaagaccataa |
216 |
Q |
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| T |
43287205 |
ctctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaa-ctagaatgattaaattaaatggacaaataagaccataa |
43287107 |
T |
|
| Q |
217 |
agttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttatctcttatgtggatgtatcaatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43287106 |
agttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttatctcgtatgtggatgtatcaatgt |
43287007 |
T |
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| Q |
317 |
caatttttgaagtttatgttataactatctaaccatgatttgacattgctcctttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43287006 |
caatttttgaagtttatgttataactatctaaccatgatttgacattgctcctttg |
43286951 |
T |
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