View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_19 (Length: 286)
Name: NF16919_high_19
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 25658082 - 25657845
Alignment:
| Q |
32 |
gaagaaatggggagttgtgtagtgttaagttgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtga |
131 |
Q |
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| T |
25658082 |
gaagaaagggggagttgtgtggtgttaagttgttaacgaaatgtcgaattgatttaatgttaatgaattatgaaaaattatgtagtcttgttgcttgtga |
25657983 |
T |
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| Q |
132 |
ctgatatagttggtgtattggttttactttctcttaagttatcgttctaaattacagatcatagacaaacnnnnnnnncatcatgagttaagttgtgtaa |
231 |
Q |
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| T |
25657982 |
ctaatatagttggtgtattggttttactttctcttaagttatcgttctgaattacagatcatagacaaac-aaaaaaacatcatgagttaagttgtgtaa |
25657884 |
T |
|
| Q |
232 |
attgtgcaaatagttctttatcccttgaagatattactg |
270 |
Q |
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| T |
25657883 |
attgtgcaaatagctgtttatcccttgaagatattactg |
25657845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 1470468 - 1470567
Alignment:
| Q |
62 |
tgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggttttactt |
160 |
Q |
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| T |
1470468 |
tgttaacttaatgtcgaattgatttaatgttaatgaattatgaaagattaggtaatgttgttatctatgacttggtatagttggtgtattcggtttactt |
1470567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 6936190 - 6936100
Alignment:
| Q |
71 |
aatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggttttactt |
160 |
Q |
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| T |
6936190 |
aatgccgaattgatttaatattaatgaatcatgaaaaattatgtaatgttgttgtttatgacttggtataattgatgtattgattttactt |
6936100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 43610034 - 43610106
Alignment:
| Q |
86 |
taatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggtttta |
157 |
Q |
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| T |
43610034 |
taatgtaaatgaatcatgacaaattatggagtgttgttgtttatgacttggtatagttgatgtattggtttta |
43610106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 31598761 - 31598696
Alignment:
| Q |
71 |
aatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgactgat |
136 |
Q |
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| T |
31598761 |
aatgtcgaattgatttaattttgatcaattgtgaaagattatgtattgttcttgtttatgactgat |
31598696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 20904445 - 20904340
Alignment:
| Q |
61 |
ttgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggttttact |
159 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||| || |||| |||||||||||||||||||||||| || |
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| T |
20904445 |
ttgttaacgtaatgtcgaattgatttaatgttaatgaattatgaaaaattatgcaatgttgtaacttatgacttgatatagttggtgtattggtttttct |
20904346 |
T |
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| Q |
160 |
ttctct |
165 |
Q |
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| |||| |
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| T |
20904345 |
tcctct |
20904340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 10991079 - 10991181
Alignment:
| Q |
64 |
ttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggttttactttc |
162 |
Q |
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|||||| |||||||| |||||||||||||||||||||||| |||||||||| |||| | | || |||| || |||||||||||||||| |||||||| | |
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| T |
10991079 |
ttaacgcaatgtcgagctgatttaatgttaatgaattatgaaaaattatgtaatgttatagcttatgacttggtatagttggtgtattgtttttacttcc |
10991178 |
T |
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| Q |
163 |
tct |
165 |
Q |
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||| |
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| T |
10991179 |
tct |
10991181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 26831988 - 26831851
Alignment:
| Q |
62 |
tgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgact-gatatagttggtgtattggttttactt |
160 |
Q |
| |
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|||||||| ||||| ||| | ||||||||||| |||||||||| | |||||||| |||||||| || ||||| |||| |||||||||||||| ||||| |
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| T |
26831988 |
tgttaacgtaatgttgaactaatttaatgttattgaattatgaaagattatgtaatgttgttgcttatgactctgtatacttggtgtattggttgtactt |
26831889 |
T |
|
| Q |
161 |
tctcttaagttatcgttctaaattacagatcatagaca |
198 |
Q |
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|||| || || ||||| | |||||||| ||||||||| |
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| T |
26831888 |
cctctgaaattgtcgttttgaattacaggtcatagaca |
26831851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 30939046 - 30939150
Alignment:
| Q |
62 |
tgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgac-tgatatagttggtgtattggttttactt |
160 |
Q |
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|||||||| |||||| ||||||||||||| ||||||||||||| | ||||| || ||| |||| || |||| || ||||||| |||||||| |||||||| |
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| T |
30939046 |
tgttaacgtaatgtcaaattgatttaatgctaatgaattatgatagattatataatgtggttgcttatgacttggtatagttagtgtattgattttactt |
30939145 |
T |
|
| Q |
161 |
tctct |
165 |
Q |
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|||| |
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|
| T |
30939146 |
cctct |
30939150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 25141309 - 25141360
Alignment:
| Q |
73 |
tgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttg |
124 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
25141309 |
tgtcgaattgatttaatgttaatgaattatgaaaaattatgtagtgttgttg |
25141360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 31177968 - 31178039
Alignment:
| Q |
62 |
tgttaacgaaatgtcgaattgatttaatgttaatgaattatgagaaattatgtactgttgttgtttgtgact |
133 |
Q |
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| T |
31177968 |
tgttcacgtaatgttgaattgatttaatgttaatgaatcttgaaaaattatgtaacgttattgtttatgact |
31178039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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