View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16919_high_28 (Length: 234)

Name: NF16919_high_28
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16919_high_28
NF16919_high_28
[»] chr8 (17 HSPs)
chr8 (1-140)||(30224300-30224439)
chr8 (1-140)||(5567496-5567635)
chr8 (1-140)||(25249076-25249215)
chr8 (1-140)||(6428810-6428950)
chr8 (1-140)||(3375456-3375584)
chr8 (13-140)||(31032038-31032164)
chr8 (13-140)||(3379149-3379275)
chr8 (71-140)||(36535924-36535993)
chr8 (1-50)||(36535873-36535922)
chr8 (13-86)||(19473656-19473728)
chr8 (13-86)||(19544581-19544653)
chr8 (13-86)||(19588043-19588115)
chr8 (202-234)||(30224206-30224238)
chr8 (13-100)||(14939625-14939711)
chr8 (202-231)||(3379337-3379366)
chr8 (202-230)||(5567406-5567434)
chr8 (202-234)||(31032222-31032254)
[»] chr4 (14 HSPs)
chr4 (1-140)||(7040431-7040570)
chr4 (1-140)||(23564697-23564836)
chr4 (1-140)||(18656178-18656317)
chr4 (21-140)||(54296498-54296617)
chr4 (1-140)||(23566391-23566510)
chr4 (2-140)||(52520671-52520810)
chr4 (83-140)||(3529251-3529308)
chr4 (13-136)||(52545137-52545259)
chr4 (13-99)||(56074680-56074766)
chr4 (2-140)||(52518829-52518968)
chr4 (83-139)||(23985845-23985901)
chr4 (202-234)||(7040337-7040369)
chr4 (202-234)||(18656084-18656116)
chr4 (202-234)||(23564898-23564930)
[»] chr2 (6 HSPs)
chr2 (1-140)||(29758190-29758329)
chr2 (30-122)||(8759115-8759207)
chr2 (13-112)||(18612074-18612174)
chr2 (86-138)||(20516051-20516103)
chr2 (202-234)||(8759206-8759238)
chr2 (202-234)||(29758096-29758128)
[»] chr3 (3 HSPs)
chr3 (1-140)||(1140071-1140210)
chr3 (1-140)||(17402804-17402944)
chr3 (1-140)||(6789690-6789829)
[»] chr6 (17 HSPs)
chr6 (1-140)||(5376947-5377087)
chr6 (1-140)||(5378802-5378942)
chr6 (1-140)||(19645322-19645461)
chr6 (1-139)||(1088675-1088813)
chr6 (88-140)||(15868462-15868514)
chr6 (49-108)||(15149108-15149167)
chr6 (2-108)||(8915570-8915676)
chr6 (88-140)||(15866650-15866702)
chr6 (88-140)||(33866169-33866221)
chr6 (2-108)||(20985831-20985937)
chr6 (11-72)||(24544757-24544818)
chr6 (88-137)||(33869319-33869368)
chr6 (2-137)||(9415141-9415276)
chr6 (205-234)||(19645526-19645555)
chr6 (202-234)||(9414995-9415027)
chr6 (202-234)||(15149268-15149300)
chr6 (2-30)||(31528957-31528985)
[»] chr7 (12 HSPs)
chr7 (1-140)||(44963233-44963372)
chr7 (1-140)||(20046517-20046658)
chr7 (2-112)||(28014296-28014406)
chr7 (2-140)||(4895654-4895792)
chr7 (2-140)||(28124610-28124749)
chr7 (2-140)||(28126437-28126576)
chr7 (2-112)||(25471794-25471904)
chr7 (88-140)||(37405559-37405611)
chr7 (2-86)||(8405631-8405715)
chr7 (71-133)||(4880280-4880343)
chr7 (99-139)||(36989570-36989610)
chr7 (202-234)||(44963139-44963171)
[»] chr1 (9 HSPs)
chr1 (1-140)||(17449381-17449519)
chr1 (4-140)||(48941670-48941810)
chr1 (88-140)||(9312099-9312151)
chr1 (2-140)||(16808601-16808740)
chr1 (88-140)||(3282871-3282923)
chr1 (88-140)||(3284572-3284624)
chr1 (88-140)||(9310482-9310534)
chr1 (21-129)||(5924828-5924935)
chr1 (202-234)||(48940652-48940684)
[»] scaffold0057 (1 HSPs)
scaffold0057 (13-140)||(58856-58982)
[»] scaffold0251 (1 HSPs)
scaffold0251 (88-140)||(6296-6348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (29-136)||(39218-39325)
[»] scaffold0189 (1 HSPs)
scaffold0189 (2-93)||(19063-19153)
[»] chr5 (4 HSPs)
chr5 (40-136)||(25076176-25076273)
chr5 (40-136)||(25134145-25134242)
chr5 (88-140)||(39787168-39787220)
chr5 (15-86)||(20012959-20013029)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 30224439 - 30224300
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30224439 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 30224340  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30224339 tgagtacaatagtgttcctatatatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5567635 - 5567496
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  5567635 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 5567536  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5567535 tgagtacaatagttttcctatatatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 25249215 - 25249076
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  25249215 gtcatatatgtaagcaagatagcaagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatcatgaa 25249116  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25249115 tgagtacaatagtgttcctatatatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6428950 - 6428810
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatg 98  Q
    |||||||||||||| |||||||||| |||||||||||| ||| | ||||||||||||| |||||||||||| | ||||||||||  |  ||||||| |||    
T  6428950 gtcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattgtag-agtgaatagatttgattaaaagatgatg 6428852  T
Q  99 aatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  6428851 aatgattacaatagtgttcctatatatagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 3375456 - 3375584
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||          |||||||||||||||||||||||| ||||||||||    
T  3375456 gtcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactca----------ttgtagaaatgaatagattgaaaa-agataatgaa 3375544  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    || ||||||||| |||||||||||||||||||||||||||    
T  3375545 tgggtacaatagagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 31032038 - 31032164
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatag 112  Q
    ||||||| |||||||||||||||||| ||| |||||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||||  | ||     
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaagatcatgaatgagtgtagtaa 31032136  T
Q  113 tgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||    
T  31032137 tgttcctatatatagagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3379149 - 3379275
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatag 112  Q
    ||||||| |||||| |||| |||||| ||| |||||||||||| || |||||||| ||||| |||||||||||| |||| || |||||||||||||||||    
T  3379149 agcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaaaatgatgaatgagtacaatag 3379247  T
Q  113 tgttcctatatatagagattagtttgag 140  Q
    | |||||  |||||||||||||||||||    
T  3379248 ttttccttaatatagagattagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 36535924 - 36535993
Alignment:
Q  71 gaaatgaatagattgaaaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| || |||||||||||||||||||||||    
T  36535924 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctatatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36535873 - 36535922
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagat 50  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  36535873 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 36535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 19473728 - 19473656
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga 86  Q
    ||||||| |||||| ||||||||||| ||| |||||||||||| || |||||||| ||| ||||||||||||||    
T  19473728 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 19544653 - 19544581
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga 86  Q
    ||||||| |||||| ||||||||||| ||| |||||||||||| || |||||||| ||| ||||||||||||||    
T  19544653 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19544581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 19588043 - 19588115
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga 86  Q
    ||||||| |||||| ||||||||||| ||| |||||||||||| || |||||||| ||| ||||||||||||||    
T  19588043 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19588115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 30224238 - 30224206
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||||||||||||||||||||||    
T  30224238 tagttgattactaactctagtctaactacctta 30224206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 14939711 - 14939625
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    ||||||| |||||||||| ||||||| |||  | ||||||||  || |||||||| ||||| |||||||||||| ||||||| |||||    
T  14939711 agcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcattatagaa-tgaatagattgataaaagatgatgaa 14939625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 3379337 - 3379366
Alignment:
Q  202 tagttgattactaactctagtctaactacc 231  Q
    ||||||||||||||||||||||||||||||    
T  3379337 tagttgattactaactctagtctaactacc 3379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 5567434 - 5567406
Alignment:
Q  202 tagttgattactaactctagtctaactac 230  Q
    |||||||||||||||||||||||||||||    
T  5567434 tagttgattactaactctagtctaactac 5567406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 31032222 - 31032254
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    ||||||||||||||||| |||||||||||||||    
T  31032222 tagttgattactaactcaagtctaactacctta 31032254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7040570 - 7040431
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7040570 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 7040471  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7040470 tgagtacaatagtgttcctatatatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 23564697 - 23564836
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23564697 gtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 23564796  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23564797 tgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18656317 - 18656178
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  18656317 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 18656218  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  18656217 tgagtacaatagttttcctatatatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 54296617 - 54296498
Alignment:
Q  21 agcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa-aaaagataatgaatgagtacaatagtgttcct 119  Q
    |||||||||||||||||| |||||||||||||||| || |||||||| || |||||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  54296617 agcaagcataagagtactgatgagggagatactcatagaaactcattata-aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcct 54296519  T
Q  120 atatatagagattagtttgag 140  Q
    |||||||||||||||||||||    
T  54296518 atatatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 23566391 - 23566510
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||                    |||||| |||||||||||||    
T  23566391 gtcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactcaaagta--------------------gattgataaaagataatgaa 23566470  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23566471 tgagtacaatagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 52520810 - 52520671
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    ||||||||||||| |||| |||||||||||||||||| ||| |||||||||||| ||  |  |||  | |||||||| | |||  |  ||||||| ||||    
T  52520810 tcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactcatagagatccatatt-gaaatgaaaatatttgattaaaagatgatga 52520712  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52520711 atgagtacaatagtgttcctatatatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  83 ttgaaaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 52545137 - 52545259
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataat-gaatgagtacaata 111  Q
    ||||||| ||| |||||||||||||| ||| |||||||||||| || |||||||| ||| |||||||||||||| ||||||||||  ||||| ||||  |    
T  52545137 agcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagataataaaatga-tacatga 52545234  T
Q  112 gtgttcctatatatagagattagtt 136  Q
    |||||||||||||||||| ||||||    
T  52545235 gtgttcctatatatagagtttagtt 52545259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 56074680 - 56074766
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatga 99  Q
    ||||||| |||||||||||||||||| ||| |||||||||||| || ||||| || |||||||||||||| ||| ||||||| ||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaatagaatgataaaagatgatga 56074766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 52518968 - 52518829
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    |||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| ||  |  |||  | ||| |||| | |||  |  ||||||| ||||    
T  52518968 tcatagatgtaagcaagagagcaagcataagagaactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 52518870  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
     ||||||||| ||||||||||||||||||||||||||||||    
T  52518869 ttgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 23985901 - 23985845
Alignment:
Q  83 ttgaaaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttga 139  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23985901 ttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 7040369 - 7040337
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||||||||||||||||||||||    
T  7040369 tagttgattactaactctagtctaactacctta 7040337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 18656116 - 18656084
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||||||||||||||||||||||    
T  18656116 tagttgattactaactctagtctaactacctta 18656084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23564898 - 23564930
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||||||||||||||||||||||    
T  23564898 tagttgattactaactctagtctaactacctta 23564930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29758329 - 29758190
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29758329 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 29758230  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29758229 tgagtacaatagtgttcctatatatagagattagtttgag 29758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 8759115 - 8759207
Alignment:
Q  30 aagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatagtgttcctata 122  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  8759115 aagagtactcatgagggagatactcaaagaaactcattgtagaaatgaacagattgataaaagatgatgaatgagtacaatagtgttcctata 8759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 18612074 - 18612174
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaag-ataatgaatgagtacaata 111  Q
    ||||||| |||||||||||||||||| ||| |||||||| | | |  |||||||| |||||||||||||||||| ||||| ||||||| |||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaatagattgataaaagtataatgattgagtacaata 18612173  T
Q  112 g 112  Q
    |    
T  18612174 g 18612174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 20516051 - 20516103
Alignment:
Q  86 aaaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttg 138  Q
    |||||| ||||||||||||||||||||||||| |||||||| | |||||||||    
T  20516051 aaaaaaaataatgaatgagtacaatagtgttcttatatataaaaattagtttg 20516103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 8759206 - 8759238
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    ||||||||||||||||| |||||||||||||||    
T  8759206 tagttgattactaactcaagtctaactacctta 8759238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 29758128 - 29758096
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||| ||||||||||||||||||    
T  29758128 tagttgattactaagtctagtctaactacctta 29758096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 1140210 - 1140071
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  1140210 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 1140111  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1140110 tgagtacaatagtgttcctatatatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 17402804 - 17402944
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  17402804 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 17402903  T
Q  101 tgagtacaatagtgttcctatatat-agagattagtttgag 140  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17402904 tgagtacaatagtgttcctatatataagagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6789829 - 6789690
Alignment:
Q  1 gtcatagatgtaagcaa-gatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatga 99  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| || |||||||||||||| ||||||||||||||||||||| |||    
T  6789829 gtcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaa-tgaatagattgaaaaaagatagtga 6789731  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  6789730 atgagtacaatagtattcctatatatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5377087 - 5376947
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  5377087 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 5376988  T
Q  101 tgagtacaatagtgttcctatatat-agagattagtttgag 140  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5376987 tgagtacaatagtgttcctatatataagagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5378942 - 5378802
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  5378942 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 5378843  T
Q  101 tgagtacaatagtgttcctatatat-agagattagtttgag 140  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5378842 tgagtacaatagtgttcctatatataagagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 19645322 - 19645461
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||| |||||||||||||    
T  19645322 gtcatagatgtaaccaagatagcaagtataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagattgataaaagataatgaa 19645421  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  19645422 tgagtacaatagtgttcttatatatagagattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1088675 - 1088813
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaa-gtaactcattgtagaaatgaatagattgaaaaaagataatga 99  Q
    ||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||| | |||||||| ||||| |||||||||||| ||||||| ||||    
T  1088675 gtcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcattatagaa-tgaatagattgataaaagatgatga 1088773  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttga 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1088774 atgagtacaatagtgttcctatatatagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 15149108 - 15149167
Alignment:
Q  49 atactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtaca 108  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15149108 atactcaaagaaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 8915676 - 8915570
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaat 101  Q
    |||||||||||||||||| ||||||||||||||||||  || || ||||||||| || |||| ||| |||||||||||||||| | |||||||  | |||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaatagattaataaaagatgctaaat 8915577  T
Q  102 gagtaca 108  Q
    |||||||    
T  8915576 gagtaca 8915570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 33866221 - 33866169
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  33866221 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtctgag 33866169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 20985831 - 20985937
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaat 101  Q
    |||||||||||| |||| | ||||||||||||||||| ||| || ||||||| | |  || ||||| |||||||||||||||||| ||||||||   |||    
T  20985831 tcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagatacttataaaaattcattatagaaatgaatagattgataaaagatagcaaat 20985930  T
Q  102 gagtaca 108  Q
    |||||||    
T  20985931 gagtaca 20985937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 24544818 - 24544757
Alignment:
Q  11 taagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtaga 72  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| || ||||||| |||||    
T  24544818 taagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 33869368 - 33869319
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagttt 137  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  33869368 aaaagatagtgaatgcgtacaatagtgttcctatatatagagattagttt 33869319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 9415276 - 9415141
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    ||||| |||||| ||| | | ||| |||||||||||| ||| |||||||||||| || |||||||||||||| ||| ||||||  |  ||||||| |  |    
T  9415276 tcataaatgtaaacaaaagaacaaacataagagtactcatgtgggagatactcatagaaactcattgtagaa-tga-tagatttgattaaaagatgacta 9415179  T
Q  100 atgagtacaatagtgttcctatatatagagattagttt 137  Q
      |||||||||||||||| |||||||||||||||||||    
T  9415178 gagagtacaatagtgttcttatatatagagattagttt 9415141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 19645526 - 19645555
Alignment:
Q  205 ttgattactaactctagtctaactacctta 234  Q
    ||||||||||||||||||||||||||||||    
T  19645526 ttgattactaactctagtctaactacctta 19645555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 9415027 - 9414995
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||| ||||||||||||||||||||||||    
T  9415027 tagttgatcactaactctagtctaactacctta 9414995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 15149268 - 15149300
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    ||||||||||||||||| |||||||||||||||    
T  15149268 tagttgattactaactcaagtctaactacctta 15149300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 31528985 - 31528957
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcata 30  Q
    |||||||||||||||||||||||||||||    
T  31528985 tcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 44963372 - 44963233
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||    
T  44963372 gtcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagattgataaaagatgatgaa 44963273  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  44963272 tgagtacaatagtgttcctatatatagagattaatttgag 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 20046517 - 20046658
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga-aaaaagataatga 99  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||    
T  20046517 gtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaaagatattga 20046616  T
Q  100 atgagtacaatagtgttcctatatat-agagattagtttgag 140  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  20046617 atgagtacaatagtgttcctatatataagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 28014296 - 28014406
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaat 101  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||| || ||||||||||||||||||||||||||| ||||||| |  |||    
T  28014296 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatgaataat 28014395  T
Q  102 gagtacaatag 112  Q
    |||||||||||    
T  28014396 gagtacaatag 28014406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 4895792 - 4895654
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa-aaaagataatgaa 100  Q
    |||||||||||||||||| ||||| |||||||||||| ||  |||||||||||| ||  |  |||  | ||| |||||| |||||  ||||||| |||||    
T  4895792 tcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactcatagagatccatattggaa-tgaatatattgattaaaagatgatgaa 4895694  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4895693 tgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 28124610 - 28124749
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||  |  |||  | ||| |||| | |||  |  ||||||| ||||    
T  28124610 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 28124708  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28124709 atgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 28126437 - 28126576
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||  |  |||  | ||| |||| | |||  |  ||||||| ||||    
T  28126437 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 28126535  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28126536 atgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 25471794 - 25471904
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaat 101  Q
    ||||||||||||| |||||||||||||||||| || | | | |||||||||| | || |||||||| || ||||||||||||||| ||||||| |  |||    
T  25471794 tcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcattatataaatgaatagattgataaaagatgaataat 25471893  T
Q  102 gagtacaatag 112  Q
    |||||||||||    
T  25471894 gagtacaatag 25471904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 8405715 - 8405631
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga 86  Q
    ||||| |||||||||| |||||||||||||||||| | ||| |||||||| ||  || |||||||||||||||||| ||||||||    
T  8405715 tcatatatgtaagcaaaatagcaagcataagagtattcatgggggagataatcgtagaaactcattgtagaaatgactagattga 8405631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 4880343 - 4880280
Alignment:
Q  71 gaaatgaat-agattgaaaaaagataatgaatgagtacaatagtgttcctatatatagagatta 133  Q
    ||||||||| ||||||| ||||||| ||||||||||| ||| |||||| ||||||| |||||||    
T  4880343 gaaatgaattagattgataaaagatgatgaatgagtataatggtgttcatatatatcgagatta 4880280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 36989570 - 36989610
Alignment:
Q  99 aatgagtacaatagtgttcctatatatagagattagtttga 139  Q
    ||||| ||||||| |||| ||||||||||||||||||||||    
T  36989570 aatgactacaataatgtttctatatatagagattagtttga 36989610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 44963171 - 44963139
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    ||||||||||||||||| |||||||||||||||    
T  44963171 tagttgattactaactcaagtctaactacctta 44963139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 17449519 - 17449381
Alignment:
Q  1 gtcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaa 100  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || | ||||||||||| ||||||||||||| |||||||||||||    
T  17449519 gtcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagattga-aaaagataatgaa 17449421  T
Q  101 tgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17449420 tgagtacaatagtgttcctatatatagagattagtttgag 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 48941810 - 48941670
Alignment:
Q  4 atagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgta--gaaatgaatagattgaa--aaaagataatga 99  Q
    |||||||||||||||| |||||| ||||||||| | ||| | |||||||||| |  |||||||| ||  ||||||||||||||  |  |||||||| |||    
T  48941810 atagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcattatatagaaatgaatagatttgattaaaagatactga 48941711  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  48941710 atgagtacaatagtgtttatatgtatagagattagtttgag 48941670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 9312151 - 9312099
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 16808601 - 16808740
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaa--aaaagataatga 99  Q
    |||||||||||||||||| |||||||||||||||||| |||  ||||||||||| ||  |  |||  | ||| |||| | |||  |  ||||||| ||||    
T  16808601 tcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 16808699  T
Q  100 atgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  16808700 atgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 9310534 - 9310482
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  9310534 aaaagataatgaatgagtacaatagtgttcctatatatagatattaatttgag 9310482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 5924828 - 5924935
Alignment:
Q  21 agcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatagtgttccta 120  Q
    |||||||||||||||| | ||   ||||||||||| || |||||||| ||||| |||||||||||| ||||||| |||||  | ||||  ||||||| ||    
T  5924828 agcaagcataagagtattcatataggagatactcatagaaactcattatagaa-tgaatagattgataaaagatgatgaaataatacacgagtgttctta 5924926  T
Q  121 tatatagag 129  Q
    |||||||||    
T  5924927 tatatagag 5924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 48940684 - 48940652
Alignment:
Q  202 tagttgattactaactctagtctaactacctta 234  Q
    |||||||||||||||||| ||||||||||||||    
T  48940684 tagttgattactaactcttgtctaactacctta 48940652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 58982 - 58856
Alignment:
Q  13 agcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatag 112  Q
    ||||||| |||||||||||||||||| ||| |||||||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaagatgatgaatgagtacaatag 58884  T
Q  113 tgttcctatatatagagattagtttgag 140  Q
    ||||||||||||||||||||||||||||    
T  58883 tgttcctatatatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 39325 - 39218
Alignment:
Q  29 taagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatg-aatgagtacaatagtgttcctatatatag 127  Q
    |||||||||| ||| |||||||||||| |  |||||||| |||||||||||||||||| ||||||| ||| ||||| ||||  |||||||||||||||||    
T  39325 taagagtactcatgtgggagatactcataaaaactcattatagaaatgaatagattgataaaagatgatgaaatga-tacatgagtgttcctatatatag 39227  T
Q  128 agattagtt 136  Q
    || ||||||    
T  39226 agtttagtt 39218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 19153 - 19063
Alignment:
Q  2 tcatagatgtaagcaagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaaga 93  Q
    ||||||||||||||||||||| ||||||| ||||||| ||| ||||||| |||| || |||||||| ||| |||||||||||||| ||||||    
T  19153 tcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcatagaaactcattatag-aatgaatagattgataaaaga 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 25076176 - 25076273
Alignment:
Q  40 atgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatag-tgttcctatatatagagattagtt 136  Q
    ||||| |||||| ||| || |||||||| |||||||||||| ||||| ||||||| ||||| ||||||||| | ||||||||||| ||||||||||||    
T  25076176 atgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagtt 25076273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 25134145 - 25134242
Alignment:
Q  40 atgagggagatactcaaagtaactcattgtagaaatgaatagattgaaaaaagataatgaatgagtacaatag-tgttcctatatatagagattagtt 136  Q
    ||||| |||||| ||| || |||||||| |||||||||||| ||||| ||||||| ||||| ||||||||| | ||||||||||| ||||||||||||    
T  25134145 atgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagtt 25134242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 39787168 - 39787220
Alignment:
Q  88 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 140  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||    
T  39787168 aaaagacagtgaatgagtaaaatagtgttcctatatatagagattagtttgag 39787220  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 20012959 - 20013029
Alignment:
Q  15 caagatagcaagcataagagtacttatgagggagatactcaaagtaactcattgtagaaatgaatagattga 86  Q
    ||||| |||||||||||||||||| ||| |||||||||||| || |||||||| ||| ||||||| ||||||    
T  20012959 caagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaattgattga 20013029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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