View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_30 (Length: 209)
Name: NF16919_high_30
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 43529822 - 43529727
Alignment:
| Q |
96 |
tgcaatcccagcaatagctccactggaaagtgaagacgaagatgatcctcgcttaaacaccggtaaatttgtcgtgttcaactctttcaaactccc |
191 |
Q |
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| T |
43529822 |
tgcaatcccagcaatagctccactggaaagtgaagacgaagatgatcctcgcttaaacaccggtaaatttgtcgtgttcaactctttcaaactccc |
43529727 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 43529897 - 43529867
Alignment:
| Q |
21 |
ttctcttctttttcgccaacgaaaatataat |
51 |
Q |
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| T |
43529897 |
ttctcttctttttcgccaacgaaaatataat |
43529867 |
T |
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