View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_6 (Length: 504)
Name: NF16919_high_6
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 43530373 - 43529888
Alignment:
| Q |
19 |
atgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgccttt |
118 |
Q |
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| T |
43530373 |
atgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgccttt |
43530274 |
T |
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| Q |
119 |
ggtcccatcccaaaactttctcaggtttatcaaaaacccacttgtttaaacttccattaggcatataatcataaaccaacatcaattcattgccctttct |
218 |
Q |
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| T |
43530273 |
ggtcccatcccaaaactttctcaggtttatcaaaaacccacttgtttaaacttccattaggcatataatcataaaccaacatcaattcattgccctttct |
43530174 |
T |
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| Q |
219 |
acaccatcccctcatttgtactaaattcttatgttgaagcctccccatacttgaaatctcagccataaattctcttaacccttgtttagaatcatgatta |
318 |
Q |
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| T |
43530173 |
acaccatcccctcatttgtactaaattcttatgttgaagcctccccatacttgaaatctcagccataaattctcttaacccttgtttagaatcatgatta |
43530074 |
T |
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| Q |
319 |
acacacttaactgcaaccaatgttttattcattaatgtacctttgtaaacttttccaaaccctccaaaacctagaagctgctctctctgaaaaccctttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43530073 |
acacacttaactgcaaccaatgttttattcattaatgtacctttgtaaacttttccaaaccctccaaaacctagaagctgctctctctgaaaaccctttg |
43529974 |
T |
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| Q |
419 |
tagcattgcttagttcctcataagagaatctatgaggccaatactccatttcccaatcttcaacatcatcatcatcttctcttctt |
504 |
Q |
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| T |
43529973 |
tagcattgcttagttcctcataagagaatctatgaggccaatactccatttcccaatcttcaacatcatcatcatcttctcttctt |
43529888 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 10191522 - 10191489
Alignment:
| Q |
164 |
ttaaacttccattaggcatataatcataaaccaa |
197 |
Q |
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| T |
10191522 |
ttaaacttccattaggcatataatcataaaccaa |
10191489 |
T |
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