View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_7 (Length: 433)
Name: NF16919_high_7
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 420
Target Start/End: Original strand, 49495718 - 49496133
Alignment:
| Q |
12 |
aagaatcttgaaagataagttttgcttttcttagaattgtttttatcaaagcttattctacattatctnnnnnnnnnnnttgttctagattaggct---- |
107 |
Q |
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| T |
49495718 |
aagaatcttgaaagataagttttgcttttcttagaattgtttttatcaaagcttattctacattatctaaaaaaaaaaattgttctagattaggctacaa |
49495817 |
T |
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| Q |
108 |
--ttaataactatcaattctacgtcctctnnnnnnnnnnnncaatcaattctatcttaaattttttgacagcttcatcaaatttccaatttcttatgaag |
205 |
Q |
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| T |
49495818 |
tcttaacaactatcaattctacgtcctctaaaaaaaaaaaacaatcaattctatcttaaattttttgatagcttcatcaaatttccaatttcttatgaag |
49495917 |
T |
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| Q |
206 |
cggttctgttattttcccattgttgacagaacacaactagaaatggaacaattatgagtaactgttttccaattaaatacacaaaccaaggaaatgatat |
305 |
Q |
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| T |
49495918 |
cggttctgttattttcccattgttgacagaacacaactagaaatggaacaattatgagtaactgttttccaattaaatacacaaaccaaggaaatgatat |
49496017 |
T |
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| Q |
306 |
gattcaattggggtactattatttatggtctcatgtcgtgacataatctcgtagctttgacaaagtggatgtgaaaactgaaaaa--ataagtagaggtg |
403 |
Q |
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| T |
49496018 |
gattcaattggggtactattatttatggtctcatgtcgtgacataatctcgtagctttgac-aagtggatgtgaaaactgaaaaaatataagtagaggtg |
49496116 |
T |
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| Q |
404 |
attgacatgaacaaatt |
420 |
Q |
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| T |
49496117 |
attgacatgaacaaatt |
49496133 |
T |
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