View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_high_8 (Length: 414)
Name: NF16919_high_8
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 31534466 - 31534859
Alignment:
| Q |
14 |
cacttgaaactatcttggaaggttagaggaaaacttcctaagaatgaagatagaggaaatagacttaattttattgatagtttctatattctcgctaaca |
113 |
Q |
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| T |
31534466 |
cacttgaaactatcttggaaggttagagaaaaacctcctaagaatgaagatagaggaaatagacttaattttattgatagtttctatattctcgctaaca |
31534565 |
T |
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| Q |
114 |
aattcagcttagctgttaggaaaagagggtaa-tattattccttcaagaactagactttgtttgatgtgcacaactaaaattagttttgtaccaagcaca |
212 |
Q |
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| T |
31534566 |
aattcagcttagctgttaggaaaagagggtaaatattattccttcaagaactagactttgtttgatgtgcacaactaaa-ttagttttgtaccaagcata |
31534664 |
T |
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| Q |
213 |
cgtctatccttcatatttgaatcaataagtctcatcattttttatttattttaacgcagtattctttcaactcattatcatctaatgactagaatgtcct |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31534665 |
cgtctatccttcatatttgaatcaataagtttcatcattttttatttattttaacgcaatatactttcaactcattatcatctaatgactagaatgtcct |
31534764 |
T |
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| Q |
313 |
ataaaactctttcgactcattatcattcttttgtgagtcatataaaattatgatttgtttctctaataggttccatttaactagaatatcctttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31534765 |
ataaaactctttcgactcattatcattcttttgtgaatcatataaaattatgatttgtttctctaataggctccatttaactagaatatcctttg |
31534859 |
T |
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