View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16919_high_9 (Length: 399)
Name: NF16919_high_9
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 50304 - 49989
Alignment:
| Q |
18 |
aagtttaaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccctaaatgaaaaggtagacattaaacaaaatataaatc |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50304 |
aagtttgaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccttaaatgaaaaggtagacattaaacaacatataaatc |
50205 |
T |
|
| Q |
118 |
atatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcaattctgacgagattctttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50204 |
atatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcagttctgacgagattctttga |
50105 |
T |
|
| Q |
218 |
agaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacatannnnnnnnnnngttgttgatgaaattagttg |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50104 |
aaaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacat--ttttttttttgttgttgatgaaattagttg |
50007 |
T |
|
| Q |
318 |
tagttgcccttataacta |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
50006 |
tagttgcccttataacta |
49989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University