View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_10 (Length: 399)
Name: NF16919_low_10
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 50304 - 49989
Alignment:
| Q |
18 |
aagtttaaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccctaaatgaaaaggtagacattaaacaaaatataaatc |
117 |
Q |
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| T |
50304 |
aagtttgaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccttaaatgaaaaggtagacattaaacaacatataaatc |
50205 |
T |
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| Q |
118 |
atatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcaattctgacgagattctttga |
217 |
Q |
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| T |
50204 |
atatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcagttctgacgagattctttga |
50105 |
T |
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| Q |
218 |
agaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacatannnnnnnnnnngttgttgatgaaattagttg |
317 |
Q |
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| T |
50104 |
aaaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacat--ttttttttttgttgttgatgaaattagttg |
50007 |
T |
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| Q |
318 |
tagttgcccttataacta |
335 |
Q |
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|||||||||||||||||| |
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| T |
50006 |
tagttgcccttataacta |
49989 |
T |
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