View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16919_low_11 (Length: 390)
Name: NF16919_low_11
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 30005651 - 30005995
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30005651 |
ataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30005750 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||| |||||||| | || || |
|
|
| T |
30005751 |
ttccaactattatcatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcgtttttgcaagtcgaccaaaggttcaaggatcagatct |
30005850 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| ||| |
|
|
| T |
30005851 |
catgtcttatggttccaaagggatggctttttctgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaactttttagtgcttcaaaa |
30005950 |
T |
|
| Q |
321 |
gttgagatgtttggttctattaggaaggaaaagttggatgttttg |
365 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30005951 |
gttgagatgtttggtcctattaggaaggagaagttggatgttttg |
30005995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 29962904 - 29963258
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29962904 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaag |
29963003 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||| | || | || |
|
|
| T |
29963004 |
ttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
29963103 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
29963104 |
cattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaa |
29963203 |
T |
|
| Q |
321 |
gttgagatgtttggttctattaggaaggaaaagttggatgttttgattaagtcat |
375 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
29963204 |
gttgagatgtttggtcctattaggaagaaggagttggatgttttggttaagtcat |
29963258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 30011894 - 30011540
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30011894 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaag |
30011795 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||| | || | || |
|
|
| T |
30011794 |
ttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
30011695 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
30011694 |
cattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaa |
30011595 |
T |
|
| Q |
321 |
gttgagatgtttggttctattaggaaggaaaagttggatgttttgattaagtcat |
375 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
30011594 |
gttgagatgtttggtcctattaggaagaaggagttggatgttttggttaagtcat |
30011540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 30071333 - 30071011
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30071333 |
ataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30071234 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||||||| ||||||| ||||||| |||| || |
|
|
| T |
30071233 |
ttccaactattatcatttcatcttcaaaagctgcagaatcatttctcaaaacccatgacatcgtttttgcaagccgaccaaagagtcaaggatctgagct |
30071134 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| |||||||||||||||| | | ||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
30071133 |
catgttatatggttccaaagggatagttttttctgactatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaa |
30071034 |
T |
|
| Q |
321 |
gttgagatgtttggttctattag |
343 |
Q |
| |
|
|||||||||| |||| ||||||| |
|
|
| T |
30071033 |
gttgagatgtctggtcctattag |
30071011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 30045503 - 30045181
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045503 |
ataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30045404 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
| ||| ||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||| |||| || |
|
|
| T |
30045403 |
tcccagctattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccacgacatcgttttcgcaagccgaccaaagattcaaggatctgagct |
30045304 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| | ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
30045303 |
catgtcttatggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaa |
30045204 |
T |
|
| Q |
321 |
gttgagatgtttggttctattag |
343 |
Q |
| |
|
|||||||||| |||| ||||||| |
|
|
| T |
30045203 |
gttgagatgtctggtcctattag |
30045181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 29949346 - 29949555
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949346 |
ataattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
29949445 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949446 |
ttccaacaattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
29949545 |
T |
|
| Q |
221 |
cataacatat |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
29949546 |
cataacatat |
29949555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 29999213 - 29999562
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999213 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttacaacttggtcaag |
29999312 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||| ||| | ||||| |||||||||| |||||||||||||||||||| || |||||| || |||||||| || |||||||||||| | || || |
|
|
| T |
29999313 |
ttccaacaattgttatttcatcttcaaaaggagcagaatcattcctcaaaacccatgacatcgttttcgcaagccgaccgaagattcaaggatcagagct |
29999412 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| | |||||||| ||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
29999413 |
catgtcctatggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaacttcttagtgcttcaaaa |
29999512 |
T |
|
| Q |
321 |
gttgagatgtttggttctattaggaaggaaaagttggatgttttgattaa |
370 |
Q |
| |
|
||||||| || ||| ||||||| || || |||||| ||||||| |||| |
|
|
| T |
29999513 |
gttgagaagtcgggtcctattagaaaagaggagttgggtgttttggttaa |
29999562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 29943678 - 29944027
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29943678 |
ataatcggaaacctccacatattaggcacccttccacatagaacacttcaatcactctccaaacaatatggtccaatcatgtccttacaactaggtcaag |
29943777 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
| ||| ||||| | ||||| ||||||||||| ||||| |||||| ||||||| || |||||| || |||| ||| || | || |||| | | | |
|
|
| T |
29943778 |
tcccagctattgtcatttcatcttcaaaagccgcagagtcattcgtcaaaacccatgacatcgttttcgcaaaccgaccggaacttgtaggagcacagat |
29943877 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
||| | ||||||| |||||||||||| ||||||||||| | ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29943878 |
catgtcttatggttgcaaagggttggcgttttctaagtacgactcttattggcgtagtgtgagaaaactttgtacttcaaaacttcttagtgcttcgaaa |
29943977 |
T |
|
| Q |
321 |
gttgagatgtttggttctattaggaaggaaaagttggatgttttgattaa |
370 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
29943978 |
gttgagatgtttggtcctattaggaaggagaagttggatgttttggttaa |
29944027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 29990509 - 29990815
Alignment:
| Q |
21 |
ataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
29990509 |
ataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggacaag |
29990608 |
T |
|
| Q |
121 |
ttccaactattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaaggaactgaact |
220 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||| |||||||||||||||||||| || |||||| || |||| ||| || || || |||| | || | |
|
|
| T |
29990609 |
ttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgttttcgcaaaccgaccgaaacttataggagcagagat |
29990708 |
T |
|
| Q |
221 |
cataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaaa |
320 |
Q |
| |
|
|||| | ||||||| |||||||||||| ||||||||||| | ||||||||||||||||| | |||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
29990709 |
catatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactctgcactttgaaacttcttagtgcttcaaaa |
29990808 |
T |
|
| Q |
321 |
gttgaga |
327 |
Q |
| |
|
||||||| |
|
|
| T |
29990809 |
gttgaga |
29990815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 220 - 375
Target Start/End: Original strand, 29951998 - 29952153
Alignment:
| Q |
220 |
tcataacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcgaa |
319 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29951998 |
tcatcacatatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcaaa |
29952097 |
T |
|
| Q |
320 |
agttgagatgtttggttctattaggaaggaaaagttggatgttttgattaagtcat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29952098 |
agttgagatgtttggttctattaggaaggaaaagttggatgttttgattaagtcat |
29952153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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