View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_14 (Length: 370)
Name: NF16919_low_14
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 44599046 - 44598830
Alignment:
| Q |
17 |
agctggtgatattacttgtgatattgttgataatgtcgaagcttgtatgttttatagagatggaagtgaatcagagaatggtggtgtagggtatggacat |
116 |
Q |
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| T |
44599046 |
agctggtgatattacttgtgatattgttgataatgtcgaagcttgtatgttttatagagatggaagtgaatcggagaatggtgttgtagggtatggacat |
44598947 |
T |
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| Q |
117 |
tcacagaagagtccttgttattattcgattgatggagatgttaagaaaccgggttatactgtttgtaagggacataagaactatgatttgattcttaatc |
216 |
Q |
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| T |
44598946 |
tcacagaagagtccttgttattattcgattgatggagatgttaagaaaccgggttatactgtttgtaagggacataagaactatgatttgattcttaatc |
44598847 |
T |
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| Q |
217 |
ttcaattgggtattagg |
233 |
Q |
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| T |
44598846 |
ttcaattgggtattagg |
44598830 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24523661 - 24523714
Alignment:
| Q |
17 |
agctggtgatattacttgtgatattgttgataatgtcgaagcttgtatgtttta |
70 |
Q |
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| T |
24523661 |
agctggtgatattacttgtgatattgttgataatgttgaagcttccatgtttta |
24523714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 39807384 - 39807322
Alignment:
| Q |
17 |
agctggtgatattacttgtgatattgttgataatgtcgaagcttgtatgttttatagagatgg |
79 |
Q |
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| T |
39807384 |
agctggtgatattacttgtgagattgttgataatgtcgatgcttctgtgttttacaaagatgg |
39807322 |
T |
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