View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_15 (Length: 347)
Name: NF16919_low_15
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 55997 - 55668
Alignment:
| Q |
2 |
acagacaacatagtgataagttgaggttcttggacaaggcttgtgtccaagaggccgggaacaacacaaaggaaagcccgtggagattgtgtagtgttgc |
101 |
Q |
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| T |
55997 |
acagacaacatagtgataagttgaggttcttggacaaggcttgtgtccaagaggccgggaacaacacaaaggaaagcccgtggagattgtgtagtgttgc |
55898 |
T |
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| Q |
102 |
acaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttcaacactatcttagcacaacttcaaacattctcggtc |
201 |
Q |
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| T |
55897 |
acaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttcaacactatcttagcacaacttcaaacattctcggtc |
55798 |
T |
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| Q |
202 |
cagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagcatcacttcagtcaattccttacatttttctcatcgttgtagtcc |
301 |
Q |
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| T |
55797 |
cagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagcatcacttcagtcaattccttacatttttctcatcgttgtagtcc |
55698 |
T |
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| Q |
302 |
ctctctatgatactttatttgttccctttg |
331 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
55697 |
ctctctatgatactttatttgttccctttg |
55668 |
T |
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