View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16919_low_18 (Length: 303)

Name: NF16919_low_18
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16919_low_18
NF16919_low_18
[»] chr6 (6 HSPs)
chr6 (103-298)||(31537211-31537406)
chr6 (17-104)||(31537082-31537169)
chr6 (205-298)||(31532031-31532124)
chr6 (17-84)||(31531771-31531835)
chr6 (113-158)||(31529792-31529836)
chr6 (103-157)||(31531897-31531950)
[»] chr7 (1 HSPs)
chr7 (35-75)||(37007957-37007997)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 31537211 - 31537406
Alignment:
Q  103 acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttattcnnnnnnngttataacagaagcagatatagtgattgcataatatt 202  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31537211 acaattgcagaaaagcaataaccaaattaattccatattataacaaaagcttattcaaaaaaagttataacagaagcagatatagtgattgcataatatt 31537310  T
Q  203 gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31537311 gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagccattttgaatcttgtattcaaatgttctgtgctcct 31537406  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 31537082 - 31537169
Alignment:
Q  17 aaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatactcaatgcaagtgcttcttggatcgatac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  31537082 aaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatactcaatacaagtgcttctgggatcgatac 31537169  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 31532031 - 31532124
Alignment:
Q  205 aagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct 298  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31532031 aagaagaagaaaaggatcaaagtatgcgtgagatacccattatattctcaaagtaagcaattttgaaccttgtattcaaatgttatgtgctcct 31532124  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 31531771 - 31531835
Alignment:
Q  17 aaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatactcaatgca 84  Q
    |||| |||||||||||||||||||||| |   |||||||||||||||||||||||||||||| |||||    
T  31531771 aaaaacatcctttcaaaaattattcttgt---taatcaccatagcaaaagagattgatactcgatgca 31531835  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 31529792 - 31529836
Alignment:
Q  113 aaaagcaataaccaaattaattccatattataacaaaagcttattc 158  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31529792 aaaagcaataaccaa-ttaattccatattataacagaagcttattc 31529836  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 31531897 - 31531950
Alignment:
Q  103 acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttatt 157  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||| | |||||||    
T  31531897 acaagtgcagaaaagcaataacc-aattaattccacattataacagacgcttatt 31531950  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 37007957 - 37007997
Alignment:
Q  35 attattcttttatctaatcaccatagcaaaagagattgata 75  Q
    |||||||||||| || |||||| ||||||||||||||||||    
T  37007957 attattcttttagctgatcaccgtagcaaaagagattgata 37007997  T

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