View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16919_low_19 (Length: 297)
Name: NF16919_low_19
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_19 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5251102 - 5250856
Alignment:
| Q |
1 |
caaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5251102 |
caaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaaga |
5251003 |
T |
|
| Q |
101 |
agctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttcatctttcactaatccatttgagtctaggattatagaattgctagagaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
5251002 |
agctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaattgctagagaa |
5250903 |
T |
|
| Q |
201 |
gcttgaatttcttgcaaagcaaaaggatatgcttggattgaaacatg |
247 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5250902 |
gctagaatttcttgcaaagcaaaaggatatgctcggattgaaacatg |
5250856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 5268989 - 5268706
Alignment:
| Q |
1 |
caaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
5268989 |
caaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaaga |
5268890 |
T |
|
| Q |
101 |
agctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttcatctttcactaatccatttgagtctaggattatagaattgctagagaa |
200 |
Q |
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||| |||| |||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
5268889 |
agcagaaacttgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattgctagagaa |
5268790 |
T |
|
| Q |
201 |
gcttgaatttcttgcaaagcaaaaggatatgcttggattgaaaca---------tgctagtagtgaaggtggagttatttggaa |
275 |
Q |
| |
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||| |||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
5268789 |
gctagaatttcttgcaaaacaaaagcatatgcttggattaaaacaagacgcttgtgctagtagtgaaggtggagttagttggaa |
5268706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4388039 - 4388277
Alignment:
| Q |
1 |
caaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4388039 |
caaagcatgtccgtgaagaagtggcttgatgatcttaaacataatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccattgaaga |
4388138 |
T |
|
| Q |
101 |
agctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttcatctttcactaatccatttgagtctaggattatagaattgctagagaa |
200 |
Q |
| |
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||| || ||| | || |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||| |
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| T |
4388139 |
agcaga------aatttgaaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaa |
4388232 |
T |
|
| Q |
201 |
gcttgaatttcttgcaaagcaaaaggatatgcttggattgaaaca |
245 |
Q |
| |
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| | ||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
4388233 |
gttagaatttcttgcgaagcaaaaggatatgctcggactgaaaca |
4388277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 5299655 - 5299434
Alignment:
| Q |
10 |
tacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaag |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | ||||| ||||||||||||| |
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| T |
5299655 |
tacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaag |
5299556 |
T |
|
| Q |
110 |
ctgaatctcaatcttctactagcaaggtattcgacttcttttcatctttcactaatccatttgagtctaggattatagaattgctagagaagcttgaatt |
209 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||| | |||||||||||||||| | ||||| |
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| T |
5299555 |
ttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaaagaattgctagagaagttagaatt |
5299456 |
T |
|
| Q |
210 |
tcttgcaaagcaaaaggatatg |
231 |
Q |
| |
|
||| |||||||||||||||||| |
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| T |
5299455 |
tctagcaaagcaaaaggatatg |
5299434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 243
Target Start/End: Original strand, 6447941 - 6448120
Alignment:
| Q |
64 |
ctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttcatctttcacta |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||| | ||| ||||| || || || | | | |
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|
| T |
6447941 |
ctgttagatgagattgcaactgatgcaccagtgaagaagctgaaggccgaatctcaaccttctactagcaatattttcaacttcattccaactcttgcca |
6448040 |
T |
|
| Q |
164 |
atccatttgagtctaggattatagaattgctagagaagcttgaatttcttgcaaagcaaaaggatatgcttggattgaaa |
243 |
Q |
| |
|
|||||||||| |||||||| | ||| |||||| |||| || || | ||||||| ||||||||||| |||| | ||||||| |
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| T |
6448041 |
atccatttgaatctaggatcaaagacttgctaaagaatctagattatcttgcagagcaaaaggatgtgctggaattgaaa |
6448120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 5281572 - 5281471
Alignment:
| Q |
16 |
aagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctgaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||| | || ||||||||||| ||||| |||| |||||| |||||||||| ||||| |
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|
| T |
5281572 |
aagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaactgaataagctgaaagatgaat |
5281473 |
T |
|
| Q |
116 |
ct |
117 |
Q |
| |
|
|| |
|
|
| T |
5281472 |
ct |
5281471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 6948193 - 6948089
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctg |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||| ||||| ||||||||||||||| | ||||||||| || || ||||||||||||| |
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|
| T |
6948193 |
gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagctg |
6948094 |
T |
|
| Q |
113 |
aatct |
117 |
Q |
| |
|
||||| |
|
|
| T |
6948093 |
aatct |
6948089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6553543 - 6553620
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgca |
90 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||| ||||| || |||||||||||| | ||||||||| |
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|
| T |
6553543 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgca |
6553620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 8455578 - 8455501
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgca |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||||| || |||||||||||| | ||||||||| |
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|
| T |
8455578 |
gtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgca |
8455501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 8590653 - 8590549
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctg |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | ||||||||| || || |||||||||||| |
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|
| T |
8590653 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgctaaataagctgaaagcta |
8590554 |
T |
|
| Q |
113 |
aatct |
117 |
Q |
| |
|
||||| |
|
|
| T |
8590553 |
aatct |
8590549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6519267 - 6519344
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgca |
90 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | ||||||||| |
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|
| T |
6519267 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgca |
6519344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 6838145 - 6838222
Alignment:
| Q |
149 |
tttcatctttcactaatccatttgagtctaggattatagaattgctagagaagcttgaatttcttgcaaagcaaaagg |
226 |
Q |
| |
|
||||| || |||||||||||||||| |||||||| | ||| ||||||| ||||| ||| ||||||| ||||||||| |
|
|
| T |
6838145 |
tttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagg |
6838222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 6479087 - 6479191
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctg |
112 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || ||||| | ||||| || ||||||||||| | ||||||||| || || ||||||||||||| |
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| T |
6479087 |
gtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatctactgatgcaatgctaaataagctgaaagctg |
6479186 |
T |
|
| Q |
113 |
aatct |
117 |
Q |
| |
|
||||| |
|
|
| T |
6479187 |
aatct |
6479191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6582 - 6659
Alignment:
| Q |
13 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgca |
90 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||| ||||| || |||||||||||| | ||||||||| |
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|
| T |
6582 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgca |
6659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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