View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16919_low_20 (Length: 289)
Name: NF16919_low_20
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 53852400 - 53852668
Alignment:
| Q |
18 |
gtattaacacaataaataatgagtttgttccttgaatatatagaggacgaagaacaagaaatatactacttgtatattagtttaaatatttatttgaaga |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53852400 |
gtattagcacaataaataatgagtttgttccttgaatatatagaggacgaagaacaagaaatatactacttgtatattagtttaaatatttatttgaaga |
53852499 |
T |
|
| Q |
118 |
ccactgagatcaaactaattaaatttcatggctttcttataaacaaaaataagtctctgttcaaataa----------caaataagtcatgtattatgca |
207 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
53852500 |
ccactgagaacaaac----taaatttcatggctttcttataaacaaaaataagtctctgttcaaataacaaataacatcaaataagtcatgcattatgca |
53852595 |
T |
|
| Q |
208 |
ccactgagatcttaatcattttcttttctattgtgacatgattttattctcggtggttactc-ttaccctttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53852596 |
ccactgagatcttaatcattttcttttctattgtgacatgattttattctcggtggttactctttaccctttg |
53852668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University