View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_23 (Length: 269)
Name: NF16919_low_23
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 42600465 - 42600288
Alignment:
| Q |
1 |
ttaaatatcacaatagcaacacattacgtatgcatatttgaaatataaactttacttcatgcaaatattgtctcattcatatcaaaacttaaaccacctg |
100 |
Q |
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| T |
42600465 |
ttaaatatcacaatag--acacattaagtatgcatatttgaaatctaaactttacttcatgcaaatattgtctcattcagatcaaaatttaaaccacctg |
42600368 |
T |
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| Q |
101 |
tgctcttttc------tattgacatacattctaaaagtctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
174 |
Q |
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| T |
42600367 |
tgttcttttctattcttattgacatacattctaaaagtctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
42600288 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 42600271 - 42600179
Alignment:
| Q |
159 |
agaaatgtcaactcctactactacttctgaaagagattggcgtaactgggttgaattgcatgatagccaaagatattgttgacattggtaaat |
251 |
Q |
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| T |
42600271 |
agaaatgtcaacacctactactacttctgaaagagattggcgtaattgggttgaattgcatgatagccaaagatattgttgacattggtaaat |
42600179 |
T |
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