View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16919_low_24 (Length: 265)

Name: NF16919_low_24
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16919_low_24
NF16919_low_24
[»] chr7 (17 HSPs)
chr7 (18-253)||(4711480-4711715)
chr7 (18-253)||(4845408-4845655)
chr7 (45-253)||(4696613-4696833)
chr7 (18-253)||(4653948-4654195)
chr7 (117-253)||(4637309-4637445)
chr7 (116-253)||(4864374-4864514)
chr7 (32-253)||(4673155-4673388)
chr7 (128-253)||(4783353-4783478)
chr7 (128-253)||(4815782-4815907)
chr7 (28-97)||(4663310-4663379)
chr7 (27-184)||(4644216-4644385)
chr7 (18-105)||(4783231-4783318)
chr7 (18-105)||(4815660-4815747)
chr7 (122-184)||(4631451-4631513)
chr7 (212-253)||(4644159-4644200)
chr7 (27-105)||(4637469-4637544)
chr7 (64-105)||(4864537-4864578)
[»] chr4 (1 HSPs)
chr4 (145-253)||(18925280-18925385)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 4711480 - 4711715
Alignment:
Q  18 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711480 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaagg 4711579  T
Q  118 aaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711580 aaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgc 4711679  T
Q  218 tttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||||||||||||||||||||||||||||||    
T  4711680 tttcattaacggaatcgaaattgtgtctatgccttc 4711715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 4845408 - 4845655
Alignment:
Q  18 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------ 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                
T  4845408 acttcataccagaactttgatccctccaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttc 4845507  T
Q  106 attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaa 205  Q
    || | |||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||    
T  4845508 atgacgaggtggaaaaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaa 4845607  T
Q  206 tccttattatgctttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  4845608 tcctttttatgctttcgttaacggaatcgaagttgtgtcgatgccttc 4845655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 45 - 253
Target Start/End: Original strand, 4696613 - 4696833
Alignment:
Q  45 aatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaag 132  Q
    ||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||            || ||||  | ||||||||||||||||    
T  4696613 aatgcacttttctctgttaaagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaag 4696712  T
Q  133 aatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaat 232  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||    
T  4696713 aatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaat 4696812  T
Q  233 cgaaattgtgtctatgccttc 253  Q
     ||| ||||||| ||||||||    
T  4696813 agaagttgtgtcaatgccttc 4696833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 4654195 - 4653948
Alignment:
Q  18 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------ 105  Q
    ||||| || ||||| ||||| ||||| ||||| |||||||||||  ||||||||||||| ||||| ||||||||||||||||  ||||                
T  4654195 acttcgtatcaaaaatttgaaccctcaaatgcacttttctctgttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattc 4654096  T
Q  106 attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaa 205  Q
    || ||||   ||||| ||||||||||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  4654095 atgatgatggggaaacaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaa 4653996  T
Q  206 tccttattatgctttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  4653995 tccttattatgctttcattaatggaattgaagttgtgtctatgccttc 4653948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 4637445 - 4637309
Alignment:
Q  117 gaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatg 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| |||||    
T  4637445 gaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatg 4637346  T
Q  217 ctttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    |||| |||||||| |||||| ||||||| ||||||||    
T  4637345 cttttattaacgggatcgaagttgtgtcaatgccttc 4637309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 4864514 - 4864374
Alignment:
Q  116 ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttat 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||    
T  4864514 ggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttat 4864415  T
Q  213 tatgctttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||    
T  4864414 tatgccttcattaatggaatagaagtcgtgtctatgccttc 4864374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 4673388 - 4673155
Alignment:
Q  32 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaa 119  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||            || || |  |||||    
T  4673388 ctttgatccctccaatgcaattttctctatcaaagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaa 4673289  T
Q  120 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 219  Q
    | |||||||||||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctt 4673189  T
Q  220 tcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||||||||||||||||||| ||||||||    
T  4673188 tcattaacggaatcgaaattgtgtcaatgccttc 4673155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 4783353 - 4783478
Alignment:
Q  128 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 227  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaac 4783452  T
Q  228 ggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||| ||||||||||||||||    
T  4783453 ggaatcgaagttgtgtctatgccttc 4783478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 4815782 - 4815907
Alignment:
Q  128 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 227  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaac 4815881  T
Q  228 ggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||| ||||||||||||||||    
T  4815882 ggaatcgaagttgtgtctatgccttc 4815907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 4663379 - 4663310
Alignment:
Q  28 aaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaactt 97  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4663379 aaaactttgaaccctccaatgcacttttctctgtcaaactaaacgacaatcttacccttcttaaaaactt 4663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 4644385 - 4644216
Alignment:
Q  27 caaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgaga 114  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||            || ||||      
T  4644385 caaaattttgaaccctcaaatgcacttttctctgtcaaagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatg 4644286  T
Q  115 aggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 184  Q
    || | || |||| |||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  4644285 agaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 4783231 - 4783318
Alignment:
Q  18 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 105  Q
    |||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||    
T  4783231 acttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaaccctt 4783318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 4815660 - 4815747
Alignment:
Q  18 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 105  Q
    |||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||    
T  4815660 acttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaaccctt 4815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  122 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 184  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 4644200 - 4644159
Alignment:
Q  212 ttatgctttcattaacggaatcgaaattgtgtctatgccttc 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttc 4644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 4637544 - 4637469
Alignment:
Q  27 caaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 105  Q
    ||||||||||| || |||| |||  |||||||||||||||| ||| ||   |||||||||||||||||||||| |||||    
T  4637544 caaaactttgaaccttccagtgcaattttctctgtcaaagtgaacgac---cttacccttcttaaaaacttcaaccctt 4637469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 4864578 - 4864537
Alignment:
Q  64 aagtaaacaacaatcttacccttcttaaaaacttcagccctt 105  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  4864578 aagtaaacaacaaaattacccttcttaaaaacttcaaccctt 4864537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 18925280 - 18925385
Alignment:
Q  145 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 244  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  245 tatgccttc 253  Q
     ||||||||    
T  18925377 catgccttc 18925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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