View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_28 (Length: 244)
Name: NF16919_low_28
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 3303352 - 3303135
Alignment:
| Q |
12 |
catcatcagttgtatgtgaccttgtgaatatgatttagaggtcattttgcttatctatgttattacttattttctatcaggcatgtgcgtgagtgtttaa |
111 |
Q |
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| T |
3303352 |
catcatgagttgtatgtgaccttgtgaatatgatttagaggtcattttgcttatctatgttattacttattttctatcaggcatgtgcgtgagtgtttaa |
3303253 |
T |
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| Q |
112 |
ggtaacattttgaattttaagaaggaacttagaatctgtgccacaatcctattattatcattcacccactctcaagtctcaaccctaggtaaatattgat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303252 |
ggtaacattttgaattttaagaaggaacttagaatctgtgccacaatcctattattatcattcacccactctcaagtctcaaccctaggtaaatattgat |
3303153 |
T |
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| Q |
212 |
tttgacaacattgatagc |
229 |
Q |
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|||||||||||||||||| |
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| T |
3303152 |
tttgacaacattgatagc |
3303135 |
T |
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