View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16919_low_29 (Length: 238)
Name: NF16919_low_29
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7036830 - 7036698
Alignment:
| Q |
1 |
ttactttcatattcacttatagacattgttctctctgattatataatatattttcgtttctctttatttcgtcaaactccaatgaacataaattctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7036830 |
ttactttcatattcacttatagacatttttctctctgattatataatatattttcgtttctctttatttcgtcaaactccaataaacataaattctggtt |
7036731 |
T |
|
| Q |
101 |
ggtagtttatgcttcatattttttaaaaagtag |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7036730 |
ggtagtttatgcttcatattttttaaaaagtag |
7036698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7898053 - 7897920
Alignment:
| Q |
1 |
ttactttcatattcactt-atagacattgttctctctgattatataatatattttcgtttctctttatttcgtcaaactccaatgaacataaattctggt |
99 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7898053 |
ttactttcatattcactttatagacatagttctctctgattatataatatcttttcgtttctctttatttcgtcaaactccaatgaacataaattctggt |
7897954 |
T |
|
| Q |
100 |
tggtagtttatgcttcatattttttaaaaagtag |
133 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
7897953 |
cggtagtttatacttcatattttttaaaaagtag |
7897920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 7039864 - 7039802
Alignment:
| Q |
63 |
tttatttcgtcaaactccaatgaacataaattctggttggtagtttatgcttcatatttttta |
125 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||| |||||| ||| |||| ||||| |
|
|
| T |
7039864 |
tttatttcgtcaaactccaataaacatcaattatggttggtggtttatactttatatatttta |
7039802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 29377321 - 29377252
Alignment:
| Q |
42 |
tataatatattttcgtttctcttt-atttcgtcaaactccaatgaacataaattctggttggtagtttat |
110 |
Q |
| |
|
|||||| | |||| |||||||||| |||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
29377321 |
tataatttctttttgtttctcttttatttcgtcaaactctaatgaacataaattttggttggtggtttat |
29377252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University