View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16919_low_3 (Length: 574)

Name: NF16919_low_3
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16919_low_3
NF16919_low_3
[»] chr6 (8 HSPs)
chr6 (1-559)||(2059640-2060195)
chr6 (128-459)||(2063509-2063833)
chr6 (399-559)||(2055480-2055654)
chr6 (438-555)||(2049384-2049503)
chr6 (91-220)||(2055641-2055773)
chr6 (510-559)||(2103481-2103530)
chr6 (470-498)||(2063459-2063487)
chr6 (511-559)||(2099583-2099631)
[»] chr8 (2 HSPs)
chr8 (262-343)||(20163111-20163193)
chr8 (262-343)||(20194303-20194385)
[»] chr7 (1 HSPs)
chr7 (262-343)||(44278815-44278897)
[»] chr2 (1 HSPs)
chr2 (510-559)||(39182167-39182216)


Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 2060195 - 2059640
Alignment:
Q  1 acgtgacatgaagcaagcaccccagaaatcaaatttcttaatccnnnnnnngggtatgttctaaaattaccttaaagtaattatgacttaaagtcaaatt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||       || |||||||||||||||||| |||||||||||||||| ||||||||||    
T  2060195 acgtgacatgaagcaagcaccc-agaaatcaaatttcttaatcctttttttggttatgttctaaaattacct-aaagtaattatgacttcaagtcaaatt 2060098  T
Q  101 attaggaagaacttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagtttt 200  Q
    ||||||||||||||||||||       ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2060097 attaggaagaacttatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacct-caatcatggtggtcatcaatcaaatagcaaatagtttt 2059999  T
Q  201 gaaatgaaagtagattagcaatgctatttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaa 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2059998 gaaatgaaagtagattagcaatgctatttctcgcaactaatatcatctcgaaagtttcgcgaataaagtttcaaccaattaagttgtgcctttcacggaa 2059899  T
Q  301 aacagagcaagtattgcttgtatgtggttacatgttttatacacttaagccatcgtgagagctttgtgaatcaaaattcgctacatcaaacattatccaa 400  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  2059898 aacaaagcaagtattgcttgtatgtggttacatgttttatacacttaagccattgtgagagtgttgtgaatcaaaattcgctacatcaaacattatccaa 2059799  T
Q  401 agtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaacttcattttgttttttaaatccctaagcaaatggtggcatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059798 agtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaacttcattttgttttttaaatccctaagcaaatggtggcatc 2059699  T
Q  501 tacaaatagtggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059698 tacaaatagtggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 2059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 128 - 459
Target Start/End: Complemental strand, 2063833 - 2063509
Alignment:
Q  128 gctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat 227  Q
    ||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2063833 gctcatttttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat 2063734  T
Q  228 ttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtgg 327  Q
    |||| |||||||||||||||||||||||||  |||||||||||||||| ||| |||| ||| |||||||| |||||| ||||||||||||||||||||||    
T  2063733 ttctcgcaactaatatcatctcgaaagtttcacgaataaagtttcaacaaatgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtgg 2063634  T
Q  328 ttacatgttttatacacttaagccatcgtgagagctttgtgaatcaaaattcgctacatcaaacattatccaaagtagaatagcagaaaatagatattca 427  Q
    ||| | |||||||       ||| ||||||||||    ||||| ||||| | | |||||||| |||| ||||||||||| ||||||||||||||||||||    
T  2063633 ttaaacgttttat-------agcaatcgtgagagtgccgtgaaccaaaacttgttacatcaagcattttccaaagtagagtagcagaaaatagatattca 2063541  T
Q  428 caaacatgcacataagaatataacaatccaaa 459  Q
    ||||||||||||||| | ||||||||||||||    
T  2063540 caaacatgcacataaaattataacaatccaaa 2063509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 399 - 559
Target Start/End: Complemental strand, 2055654 - 2055480
Alignment:
Q  399 aaagtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaacttcat-------tttgttttttaaatccctaagcaaat 491  Q
    |||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||       |||| ||||||| | |||||||||||    
T  2055654 aaagtagattagcagaaaataaagattcacaaacaagcacataaaaatataacaatccaaacttcatagcagtatttgatttttaacttcctaagcaaat 2055555  T
Q  492 ggtgg-------catctacaaa-tagtggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 559  Q
    |||||       ||| |||||| |  |||||| |||||||| |||| ||||||||||||| || ||||||||||||    
T  2055554 ggtgggcatttacatttacaaagtcatggcatgttcaaatt-acaaaattgtaaacaacaattgacctttgacatg 2055480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 438 - 555
Target Start/End: Complemental strand, 2049503 - 2049384
Alignment:
Q  438 cataagaatataacaatccaaacttcattttg-ttttttaaatccctaagcaaatgg-tggcatctacaaatagtggcatattcaaattaacaatattgt 535  Q
    ||||| ||||||||||||||||| | | |  | |||||||| |||||||||||||||  ||||||||||| |  |||||| |||||| |||||| |||||    
T  2049503 cataaaaatataacaatccaaacataactcagtttttttaattccctaagcaaatggcgggcatctacaagtcatggcatgttcaaaataacaaaattgt 2049404  T
Q  536 aaacaacatttaacctttga 555  Q
    ||||||||||| ||||||||    
T  2049403 aaacaacatttgacctttga 2049384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 2055773 - 2055641
Alignment:
Q  91 aagtcaaattattaggaagaac-ttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttc---aatcatggtggtcatcaatcaaa 186  Q
    |||||||||||||||||||||| ||||||||       ||||| |||||||||||||| ||||||| |||||||   | |||||||| ||||  |||||     
T  2055773 aagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa-caccttcttcagtcatggtgatcattgatcaag 2055675  T
Q  187 tagcaaatagttttgaaatgaaagtagattagca 220  Q
    ||||||| |||||| |||| ||||||||||||||    
T  2055674 tagcaaagagttttaaaataaaagtagattagca 2055641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 2103530 - 2103481
Alignment:
Q  510 tggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 559  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||||    
T  2103530 tggcatgttcaaattgacaaaattgtaaacaacattcgacctttgacatg 2103481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 498
Target Start/End: Complemental strand, 2063487 - 2063459
Alignment:
Q  470 ttttttaaatccctaagcaaatggtggca 498  Q
    |||||||||||||||||||||||||||||    
T  2063487 ttttttaaatccctaagcaaatggtggca 2063459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 2099631 - 2099583
Alignment:
Q  511 ggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 559  Q
    ||||| |||||||| ||||||||  ||||||||||| ||||||||||||    
T  2099631 ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatg 2099583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 20163111 - 20163193
Alignment:
Q  262 aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca 343  Q
    ||||||||||||| ||||||||  ||| ||||   |||||||||  | |||||||| |||||||||||| |||||||||||||    
T  20163111 aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca 20163193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 20194385 - 20194303
Alignment:
Q  262 aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca 343  Q
    ||||||||||||| ||||||||  ||| ||||   |||||||||  | |||||||| |||||||||||| |||||||||||||    
T  20194385 aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca 20194303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 44278897 - 44278815
Alignment:
Q  262 aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca 343  Q
    ||||||||||||| ||||||||  ||| ||||   |||||||||  | |||||||| |||||||||||| |||||||||||||    
T  44278897 aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca 44278815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 39182167 - 39182216
Alignment:
Q  510 tggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg 559  Q
    |||||| |||||||| |||| |||||||||||||||| || |||||||||    
T  39182167 tggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatg 39182216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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