View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16919_low_4 (Length: 560)
Name: NF16919_low_4
Description: NF16919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16919_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Original strand, 48461012 - 48461547
Alignment:
| Q |
17 |
attaaccggatacatccgtggttcaccgtagatggaaaaattcacagcgaagtaaacagcggctgtgagaagcaatggtggccggccggtggtggcgcct |
116 |
Q |
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| T |
48461012 |
attaaccggatacatccgtggttcaccgtagatggaaaaattcacagcgaagtaaacagcggctgtgagaagcaacggtggccggccggtggtggcgcct |
48461111 |
T |
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| Q |
117 |
tcatcggagatagcttttcgccattggaagagcaattctccgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccattga |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48461112 |
tcatcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccatcga |
48461211 |
T |
|
| Q |
217 |
atccaaatgtacgagcaacgttgagtgtagagttaatgaaggcggcacgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgc |
316 |
Q |
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| T |
48461212 |
atccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacctgc |
48461311 |
T |
|
| Q |
317 |
acctccaatggaaaagagagtagctgcaggaggggatttggttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagt |
416 |
Q |
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| T |
48461312 |
acctccaatggaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagt |
48461411 |
T |
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| Q |
417 |
ttgtaggtgatgttgttgggtgtgaggaatgagtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagt |
516 |
Q |
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| T |
48461412 |
ttgtaggtgatgttgttgggtgtgaggaatgagtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagt |
48461511 |
T |
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| Q |
517 |
aaatacctttcacacgtgtgattgatgatgatgatg |
552 |
Q |
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| T |
48461512 |
aaatacctttcacacgtgtgattgatgatgatgatg |
48461547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 48455559 - 48455927
Alignment:
| Q |
20 |
aaccggatacatccgtggttcaccgtagatggaaaaattcacagcgaagtaaacagcggctgtgagaagcaatggtggccggccggtggtggcgccttca |
119 |
Q |
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| T |
48455559 |
aaccggatacatccgccgttcaccggagaggaaaaaattaacggcaaagtaaacagcggcggtgagaagcaaaggtggccggctggtggaggttgcttcg |
48455658 |
T |
|
| Q |
120 |
tcggagatagcttttcgccattggaagagcaattctccgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccattgaatc |
219 |
Q |
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| T |
48455659 |
tcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcgaatc |
48455758 |
T |
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| Q |
220 |
caaatgtacgagcaacgttgagtgtagagttaatgaaggcggcacgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacc |
319 |
Q |
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| T |
48455759 |
caaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagaggcaatgaaagcaaagagtgtggaattgctagttgcacc |
48455858 |
T |
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| Q |
320 |
tccaatggaaaagagagtagctgcaggaggggatttggttttgaaggttttggtgaaagtgttgaggga |
388 |
Q |
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||||||||||| ||| |||| ||||||| ||| |||||||| || ||||||||||| ||||||| |
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| T |
48455859 |
tccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgaggga |
48455927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 552
Target Start/End: Original strand, 48456000 - 48456103
Alignment:
| Q |
449 |
gtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
548 |
Q |
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|||||| |||||||| || |||||||| |||| || ||||||||||| ||| ||||||| |||||| || ||||||||||||||| ||||||||| | |
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| T |
48456000 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggt |
48456099 |
T |
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| Q |
549 |
gatg |
552 |
Q |
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|||| |
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| T |
48456100 |
gatg |
48456103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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