View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_high_10 (Length: 297)
Name: NF1691_high_10
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 52764404 - 52764586
Alignment:
| Q |
23 |
aaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaactgaatagtgtgaaccataattcaaaacttcggacnnnnnnngac |
122 |
Q |
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| T |
52764404 |
aaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaactgaatagtgtgaaacataattcaaaacttcggacaaaaaaagac |
52764503 |
T |
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| Q |
123 |
atctcaaaagtactcaatatggggcctattttgaggtaccagttaaacatgttggaataatggacttgttagtacccagaaga |
205 |
Q |
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| T |
52764504 |
atctcaaaagtactcaatatggggcctattttgaggtaccagttaaacatgttggaataatggacttgttagtacccagaaga |
52764586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 52770391 - 52770536
Alignment:
| Q |
23 |
aaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaactgaatagtgtgaaccataattcaaaacttcggacnnnnnnnga- |
121 |
Q |
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|||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
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| T |
52770391 |
aaatcgataaagattatccggatctacagttccacaagcattgatttgattgaaactgaatagtgtgaaacataattcaaaacttcagacaaaaaaaaaa |
52770490 |
T |
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| Q |
122 |
--catctcaaaagtactcaatatggggcctattttgaggtaccagt |
165 |
Q |
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| T |
52770491 |
tccatctcaaaagtactcagtatggggcctatttttaagtaccagt |
52770536 |
T |
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