View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_high_11 (Length: 296)
Name: NF1691_high_11
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 36552675 - 36552492
Alignment:
| Q |
93 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggcc |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36552675 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggcc |
36552576 |
T |
|
| Q |
193 |
ttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
278 |
Q |
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| T |
36552575 |
ttgttagcaaacttcagtgc--ctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
36552492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 36524896 - 36524666
Alignment:
| Q |
25 |
tttctgtactgtttccttatgatggcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcag |
124 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| || ||||| ||||||| |
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| T |
36524896 |
tttctgtactgtttctttatgattgcttcctcggagagactttctgtctgaagaattccataccagtccatatcagacttagacagcttgttaagtgcag |
36524797 |
T |
|
| Q |
125 |
cattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaat |
224 |
Q |
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| T |
36524796 |
cattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgc--ctctacaaat |
36524699 |
T |
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| Q |
225 |
tcaccaatttgcatcttagtttccgccagttgc |
257 |
Q |
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| T |
36524698 |
tcacccctttgcattctactttccgccagttgc |
36524666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 36531236 - 36530999
Alignment:
| Q |
20 |
caagctttctgtactgtttccttatgatggcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgag |
119 |
Q |
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||||||| ||||||||||| ||||||| ||||||||||| | |||| | |||||||| ||||||||||||||| ||| || |||| || |||||||| |
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| T |
36531236 |
caagcttcttgtactgtttctttatgattgcttcctcggataatttttcagtctgaagaactccataccagtccatatcatacttagacagcttgttgag |
36531137 |
T |
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| Q |
120 |
tgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctcta |
219 |
Q |
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| T |
36531136 |
tgcagcattgtgaacctcacaaacagcaaggatctgagcaatgttttcaacatcagcatagagccttttggccttgttagcaaacttcagtgc--atcta |
36531039 |
T |
|
| Q |
220 |
caaattcaccaatttgcatcttagtttccgccagttgctt |
259 |
Q |
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| T |
36531038 |
caaattcacccctttgcattttagtttctgccagttgctt |
36530999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 26306105 - 26306355
Alignment:
| Q |
22 |
agctttctgtactgtttccttatgatggcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtg |
121 |
Q |
| |
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|||||||||||||| || ||||||| ||||||||||||| || | || |||||||||| |||| ||||||||||| ||||||||||||| || |||| |
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| T |
26306105 |
agctttctgtactgcgtctttatgattgcttcctcggagaatctatgtgtctgaagaatttcataatagtccatttcaaacatagagagtttcttcagtg |
26306204 |
T |
|
| Q |
122 |
cagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctaca |
221 |
Q |
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||||| |||||||||||||||| ||||| | ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
26306205 |
cagcaatgtgaacctcacaaactgcaaggacctgagcaatgttttccacaccagcatacagatttttggcctttttagcaaacttcagtgc--atctacg |
26306302 |
T |
|
| Q |
222 |
aattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctc |
274 |
Q |
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|||||||| ||||||| ||||||||||||||||| || |||| |||||||| |
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|
| T |
26306303 |
aattcacccctttgcattttagtttccgccagttgtttagcccttacagcctc |
26306355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 20716226 - 20716342
Alignment:
| Q |
24 |
ctttctgtactgtttccttatgatggcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgca |
123 |
Q |
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|||||||||||||||| || |||| | |||||||||||| ||||||| |||||||||| ||||||||||||||||| || ||||||||||| |||||||| |
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| T |
20716226 |
ctttctgtactgtttctttgtgattgtttcctcggagagtctttctgtctgaagaatttcataccagtccatttcacacctagagagtttgctgagtgca |
20716325 |
T |
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| Q |
124 |
gcattgtgaacctcaca |
140 |
Q |
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||||||||||||||||| |
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| T |
20716326 |
gcattgtgaacctcaca |
20716342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 47090698 - 47090764
Alignment:
| Q |
74 |
gaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
140 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
47090698 |
gaagaattccataccagtccatatcagacatagagagtttgttctgtgcagcacagtgaacctcaca |
47090764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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