View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_high_2 (Length: 590)
Name: NF1691_high_2
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 141 - 571
Target Start/End: Original strand, 10202718 - 10203145
Alignment:
| Q |
141 |
cgaacggttgttgctgtcatgagtgtttcgggtttggtgttgggtgggaggtcggagagggtgaccggaggaaggaagacgtgggaaatgccatgaggta |
240 |
Q |
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| T |
10202718 |
cgaacggtggtggctgtcatgagtgtttcgggtttggtgttgggtgggaggtcggagagggtgatcggaggaaggaagacgtgggaaatgccatgaggta |
10202817 |
T |
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| Q |
241 |
gggaggtgagtacggtggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattc |
340 |
Q |
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| T |
10202818 |
gggaggtgagtacggtggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattc |
10202917 |
T |
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| Q |
341 |
gaccattggaatgagatgtcccattcctggagttggaaacatggctactagaggtggtagttcttgttttggtgtggtcctggattgttgttgatattcc |
440 |
Q |
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| T |
10202918 |
gaccattggaatgagatgtcccattcctggagttggaaacatggctactagaggtggtagttcttgttttggtgtggtcctggattgttgttgatattcc |
10203017 |
T |
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| Q |
441 |
ata-ttgaagattgaatgtgataatgattatgat---nnnnnnnngtgaaaggattttatatataatcttttgtgcttttggttggagcaaaggtcgagt |
536 |
Q |
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| T |
10203018 |
atatttgaagattgaaggtgataatgattatgataaaaaaaaaaagtgaaaggatt-------tatgcttttgtgcttttggttggagcaaaggtcgtgt |
10203110 |
T |
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| Q |
537 |
tgctatttgaatttggaaacaagagtactgtggaa |
571 |
Q |
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| T |
10203111 |
tgctatttgagtttggaaacaagagtgctgtggaa |
10203145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 157 - 571
Target Start/End: Original strand, 10209807 - 10210222
Alignment:
| Q |
157 |
tcatgagtgtttcgggtttggtgttgggtgggaggtcggagagggtgaccggaggaaggaagacgtgggaaatgccatgaggtagggaggtgagtacggt |
256 |
Q |
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| T |
10209807 |
tcatgagtggttcaggtttggtgttgggtgggaggtcggagagggtgaccggagggaggaagacgtgggaaatgccatgaggtagggaggtgagtacggt |
10209906 |
T |
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| Q |
257 |
ggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgaga |
356 |
Q |
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| T |
10209907 |
tgtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgaga |
10210006 |
T |
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| Q |
357 |
tgtcccattcctggagttggaaacatggctactagaggtggtagttcttgttttggtgtggtcctggattgttgttgatattccatattgaagattgaat |
456 |
Q |
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| T |
10210007 |
tgtcccattcctggagttggaaacatggctactagaggtggtagttcttgttttggtgtggtcctggattgttgttgatattccatattgaagattgaag |
10210106 |
T |
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| Q |
457 |
gtgataatgattatgat---nnnnnnnngtgaaaggattttatatataatcttttgtgcttttggttggagcaaaggtcgagttgctatttgaatttgg- |
552 |
Q |
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| T |
10210107 |
gtgataatggttatgataaaaaaaaaaagtgaaaggattttatatat--gtttttgtgcttttggttggagtgaaggtcgtgttgcta-ttgagtttgga |
10210203 |
T |
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| Q |
553 |
aaacaagagtactgtggaa |
571 |
Q |
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| T |
10210204 |
aaacaggagtattgtggaa |
10210222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10202593 - 10202652
Alignment:
| Q |
16 |
atgaagggatatctagttcagcggccatgtcaaagacatcggtgccgaataggtcaacaa |
75 |
Q |
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| T |
10202593 |
atgaagggatatctagttcagcggccatgtcaaagacatcagtgccgaataggtcgacaa |
10202652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 10209668 - 10209720
Alignment:
| Q |
18 |
gaagggatatctagttcagcggccatgtcaaagacatcggtgccgaataggtc |
70 |
Q |
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| T |
10209668 |
gaagggatatctagttcagcggccatgtcaaaggcatcggtaccaaataggtc |
10209720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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