View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_high_20 (Length: 234)
Name: NF1691_high_20
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 5933667 - 5933813
Alignment:
| Q |
24 |
catattttctaagcagtaggggtctgctaatgcaccaaa---------cataatgctgaaattcttaaaagatttgatatgcatcactgcaatcatgtag |
114 |
Q |
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| T |
5933667 |
catattttctaagcagtaggggtctcctaatgcaccaaagaagacatgcatgttgctgaaattcttaaaagatttgatatgcaacactgcaatcatgtag |
5933766 |
T |
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| Q |
115 |
tgacttttgctgagaccaaaatcatctctgtcaagatgtgtcattaa |
161 |
Q |
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| T |
5933767 |
tgactcttgccgagaccaaaatcatctctgtcaagatgtgacattaa |
5933813 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 5933830 - 5933895
Alignment:
| Q |
153 |
tgtcattaacttaactaaaaattccattgtgtatgagagaactaaccatataggaacgatgttcat |
218 |
Q |
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| T |
5933830 |
tgtcattaacttaactaaaaattccattgtgaatgagagaactaaccatataggaacgaggttcat |
5933895 |
T |
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