View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691_high_21 (Length: 229)

Name: NF1691_high_21
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691_high_21
NF1691_high_21
[»] chr2 (17 HSPs)
chr2 (1-229)||(9292365-9292593)
chr2 (67-225)||(9283721-9283879)
chr2 (1-229)||(9316465-9316693)
chr2 (1-229)||(9357620-9357845)
chr2 (64-229)||(9329036-9329201)
chr2 (1-229)||(10353558-10353786)
chr2 (66-229)||(9060665-9060828)
chr2 (64-229)||(9321413-9321578)
chr2 (1-143)||(9275044-9275186)
chr2 (67-136)||(10372391-10372460)
chr2 (173-229)||(10336281-10336337)
chr2 (173-229)||(10348228-10348284)
chr2 (64-136)||(10348312-10348384)
chr2 (179-225)||(8573142-8573188)
chr2 (173-229)||(10372307-10372363)
chr2 (1-39)||(7115117-7115155)
chr2 (168-229)||(7115271-7115332)
[»] chr3 (1 HSPs)
chr3 (1-229)||(37462935-37463163)
[»] chr4 (1 HSPs)
chr4 (1-229)||(26575310-26575538)
[»] scaffold0667 (2 HSPs)
scaffold0667 (173-228)||(4921-4976)
scaffold0667 (1-125)||(5018-5142)
[»] chr8 (2 HSPs)
chr8 (175-229)||(41966362-41966416)
chr8 (67-123)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (175-222)||(29467429-29467476)
chr1 (175-226)||(29423708-29423759)
chr1 (178-229)||(29452955-29453006)
chr1 (179-229)||(29442970-29443020)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9292593 - 9292365
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9292593 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaac 9292494  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9292493 atcggattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatcc 9292394  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
    |||||||||||||||||||||||||||||    
T  9292393 attaaccggcgattacaaactcctcagaa 9292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 9283721 - 9283879
Alignment:
Q  67 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg 166  Q
    ||||||||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  167 caggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctc 225  Q
      ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctc 9283879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9316693 - 9316465
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    |||||||||||||| ||||||||||||||| | ||||||   |||| |||||||| || | | |||||||||||| ||| |||||||||||| | |||||    
T  9316693 tcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccgtaaac 9316594  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    || | ||||||||||| || |||||||||||||||||||||||||| ||||| ||     ||||||  ||| ||||||||||||||||||||| ||||||    
T  9316593 atcgtattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatcc 9316494  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
    || ||| || |||||||||||||||||||    
T  9316493 atcaacaggtgattacaaactcctcagaa 9316465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9357845 - 9357620
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    ||||||||||||||||||||||| |||||| || |||||   |||| |||||||  |||| | ||||||||| || ||| ||||| |||||  | |||||    
T  9357845 tcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaac 9357746  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    ||   ||||||||||| ||||||||| ||||||||||||||||    |||   ||||||||  |||   |||||||||||||||||||||||| ||||||    
T  9357745 atcacattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacggcg---gtgtatgcgttcacggcttcggttttgatcc 9357649  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
     ||||||||||||||||||||||||||||    
T  9357648 tttaaccggcgattacaaactcctcagaa 9357620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 9329201 - 9329036
Alignment:
Q  64 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 163  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |||||  |||    
T  9329201 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc 9329102  T
Q  164 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||       ||||||||||||| ||||||| |||||| ||| |||| |||||||||||||||||||    
T  9329101 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaa 9329036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 10353786 - 10353558
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    ||||||||||||||||||||||| ||| |  ||  |||    ||||||||||||  |||||| |||||||||||| | | |||||| ||||| | ||| |    
T  10353786 tcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagc 10353687  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    || ||||||||||||||||||||||| ||||||||||||||||  | ||||| |||  | | || |   |  |||||||||| |||||||||| |||| |    
T  10353686 atcggattatcccttttctccctcttcctatccctaacattctccaatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattc 10353587  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
      || ||||||||||||||||||||||||    
T  10353586 tgtatccggcgattacaaactcctcagaa 10353558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 9060665 - 9060828
Alignment:
Q  66 cgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc 165  Q
    ||||| |||| ||| |||||||||||| |  ||| || |||  ||||||||| |||||||| ||||||||||||||   || ||||| |||    |||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  166 gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    |  ||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaa 9060828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 9321578 - 9321413
Alignment:
Q  64 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 163  Q
    |||||||||||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || |||||  |||    
T  9321578 aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc 9321479  T
Q  164 gc-gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    || || | | |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  9321478 gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaa 9321413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 9275186 - 9275044
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    ||||||||||||||| | || || |||||| |||||| |  ||||| |||||||  ||   | || ||||| ||| ||| ||||||||||||   |||||    
T  9275186 tcatgtaacggcctcattgctatctccaatggccaaaccgccttcaggcatcctgacgatgcaaatgaaattacaatctggaaccctaacaccggtaaac 9275087  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattct 143  Q
    || ||||||||||||||||||||||| |||| |||||||||||    
T  9275086 atcggattatcccttttctccctcttcctatacctaacattct 9275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
Q  67 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 136  Q
    ||||||||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| ||||    
T  10372460 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 10336337 - 10336281
Alignment:
Q  173 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||    
T  10336337 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaa 10336281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 10348284 - 10348228
Alignment:
Q  173 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||||||||||||||||||||| ||||| | || |||| |||||||||||||||||||    
T  10348284 tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaa 10348228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 10348384 - 10348312
Alignment:
Q  64 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 136  Q
    |||||||||||| ||| |||||||||||| | |||||||   ||||||||||||||||||||| |||| ||||    
T  10348384 aacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta 10348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 8573142 - 8573188
Alignment:
Q  179 ttcacggcttcggttatgatccattaaccggcgattacaaactcctc 225  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctc 8573188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 10372363 - 10372307
Alignment:
Q  173 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    |||||||||| |||||||||| |||| | ||| |||||||| |||||||||||||||    
T  10372363 tatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaa 10372307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7115117 - 7115155
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatc 39  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  7115117 tcatgtaacggcctcctcgccatctccaatggccaaatc 7115155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7115271 - 7115332
Alignment:
Q  168 aggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |  ||||||||||| |||||||    
T  7115271 aggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcagaa 7115332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37463163 - 37462935
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    |||||||||||||||||||| || |||||| ||||||||   ||||||||||||  |||| | |||||||||||| ||| |||||||||||| | |||||    
T  37463163 tcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaac 37463064  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    ||  ||||||||||||||||||| |  || ||||| ||||| | || ||  | |||  | | ||||   |  ||||||||||||||||||||| |||| |    
T  37463063 atctgattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattc 37462964  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
     ||||||||||||||||||||||||||||    
T  37462963 tttaaccggcgattacaaactcctcagaa 37462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26575538 - 26575310
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaac 100  Q
    ||||||||||||||||||||||| ||| |  ||  |||    |||||||||||   |||||| ||||||||| || ||| ||||||| ||||   ||||     
T  26575538 tcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgcaatctggaacccttacaccggtaaat 26575439  T
Q  101 ataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatcc 200  Q
    || ||||||||||||||||||||||| | ||||||||||||||  | ||||| |||  | |||| |   |  ||||||||||||||||||||| |||| |    
T  26575438 atcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggttttgattc 26575339  T
Q  201 attaaccggcgattacaaactcctcagaa 229  Q
     ||| ||||||||||||||||||||||||    
T  26575338 tttatccggcgattacaaactcctcagaa 26575310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 4976 - 4921
Alignment:
Q  173 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcaga 228  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  4976 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5142 - 5018
Alignment:
Q  1 tcatgtaacggcctcctcgccatttccaatagccaaatctgct-tcacgcatccttgcgcccctaacgaaatcacagtcttgaaccctaacactcataaa 99  Q
    ||||||||||||||||||||| |||||||  || ||||| ||| |||  ||||||  |||| | |||||||||||| ||| |||||||||||  | ||||    
T  5142 tcatgtaacggcctcctcgccgtttccaacggcgaaatc-gctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatccgtaaa 5044  T
Q  100 cataggattatcccttttctccctct 125  Q
    |||   ||||||||||||||||||||    
T  5043 catcacattatcccttttctccctct 5018  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 41966362 - 41966416
Alignment:
Q  175 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaa 41966416  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 41966254 - 41966310
Alignment:
Q  67 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccct 123  Q
    ||||||||| ||| |||||||||||    ||||||| ||||||||||||||||||||    
T  41966254 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccct 41966310  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 29467429 - 29467476
Alignment:
Q  175 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactc 222  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaactc 29467476  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 29423759 - 29423708
Alignment:
Q  175 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctca 226  Q
    |||||| |||||||||||| |||||||||||| |  ||||||||||||||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctca 29423708  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 29452955 - 29453006
Alignment:
Q  178 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||||||||||| |||| |||||| |||| || ||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaa 29453006  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 29442970 - 29443020
Alignment:
Q  179 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 229  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||| ||||||    
T  29442970 ttcacggcttcggttttgatccattgaccaacgattacaaactcatcagaa 29443020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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