View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1691_high_8 (Length: 345)
Name: NF1691_high_8
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_high_8 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 66854 - 66544
Alignment:
| Q |
25 |
ataacttcatcggaagaattcacattaaatacgattttataatttgttgtgttatctgtgttgtattttgtataagttatatatattcatattgcaagga |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66854 |
ataacttcatcggaagaattcacattaaatacgattt-ataatttgttgtgttatctgtgttgtattttgtataagttatatatattcatattgcaagga |
66756 |
T |
|
| Q |
125 |
agcatttatccaaaactggatctcgctaacaatctcttctcttgccaactttccaccgattcacactcttccctcaaagtttcttcatattcgtcagtgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66755 |
agcatttatccaaaactggatctcgctaacaatctcttctcttgccaactttccaccgattcacactcttccctcaaagtttcttcatattcgtcagtgt |
66656 |
T |
|
| Q |
225 |
tgtcaatgtcaagtgttaaagtgagagctgttttgaattttatattcatcaacagaagtgaggacttttttatgtacccttttcttggctttttaaggtt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66655 |
tgtcaatgtcaagtgttaaagtgagagctgttttgaattttatattcatcaacagaagtgaggacttttttatgtacccttttcttggctttttaaggtt |
66556 |
T |
|
| Q |
325 |
tagaagaataat |
336 |
Q |
| |
|
|||||||||||| |
|
|
| T |
66555 |
tagaagaataat |
66544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 72843 - 72809
Alignment:
| Q |
232 |
gtcaagtgttaaagtgagagctgttttgaatttta |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
72843 |
gtcaagtgttaaagtgagagctgctttgaatttta |
72809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 32007208 - 32007139
Alignment:
| Q |
134 |
ccaaaactggatctcgctaacaatctcttctcttgccaactttccaccgattcacactcttccctcaaag |
203 |
Q |
| |
|
|||||| || ||||| | ||| |||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32007208 |
ccaaaaatgaatctccccaacgatctcttctcttccgaactttccaccgattcacactcttctctcaaag |
32007139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 21005455 - 21005395
Alignment:
| Q |
84 |
gttgtattttgtataagttatatatattcatattgcaaggaagcatttatccaaaactggatctc |
148 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
21005455 |
gttgaattttgtataagttatat----tcgtattgaaaggaagcatttatccaaaaatggatctc |
21005395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 21005528 - 21005466
Alignment:
| Q |
25 |
ataacttcatcggaagaattcacattaaatacgattttataatttgttgtgttatctgtgttgt |
88 |
Q |
| |
|
|||||||||| | |||||||||| |||| |||||| | || ||||||||||||||||||||||| |
|
|
| T |
21005528 |
ataacttcattgaaagaattcacgttaagtacgatgt-attatttgttgtgttatctgtgttgt |
21005466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 31987190 - 31987159
Alignment:
| Q |
304 |
ttttcttggctttttaaggtttagaagaataa |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31987190 |
ttttcttggctttttaaggtttagaagaataa |
31987159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 32002264 - 32002217
Alignment:
| Q |
156 |
atctcttctcttgccaactttccaccgattcacactcttccctcaaag |
203 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
32002264 |
atctcttctcttccaaactttccaccgagtcacactcttctctcaaag |
32002217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University