View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_1 (Length: 683)
Name: NF1691_low_1
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 33995297 - 33994621
Alignment:
| Q |
1 |
cgttgatgaaaaaatatggttgatagaagagactccgacaaaggtggtaagttagattccccaacacatattagttgtttgtgaaagatgataaatactt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33995297 |
cgttgatgaaaaaatatggttgatagaagagaccccgacaaaggtggtaagttagattccccaacacatattagttgtttgtgaaagacgataaatactt |
33995198 |
T |
|
| Q |
101 |
cgcaccaatgacacgattaccaaaatatgtagttggaaggagagattccactaaatatggtcggtaagatcccccgtaacagactagtcatccgtagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
33995197 |
cgcaccaatgacacgattaccaaaatatgtagttggaaggagagattccactaaatatggtcggtgagatcccccgtaacagactagtcattcgtggatg |
33995098 |
T |
|
| Q |
201 |
tttcgcactaatacgatggtaacnnnnnnnnnnnnnnntaatgtagcgaagtaaggagtatactagtattactaatatttcactcttca------tgcaa |
294 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33995097 |
tttcgcactaatacgatggtaa---aaaaaaatataaataatgtagcgaaataaggagtatactagtattactaatatttcactcttcacatttgtgcaa |
33995001 |
T |
|
| Q |
295 |
agtaacnnnnnnnncttgtaaatgataaatgaattaccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaata |
394 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995000 |
agtaacttttttttcttgtaaatgataaatgaattaccttaacttgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaata |
33994901 |
T |
|
| Q |
395 |
gcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctattcacaacaacatttttagatgaatttggattctctgctgt |
494 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33994900 |
gcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctattcacaacaacatttttagatgaatttggattctctgctgt |
33994801 |
T |
|
| Q |
495 |
aacagcgagacggaatatttggaccgtcggatctcaaatcaatgatcatgataacataattaacagcagagaatattagataaggttcacttgccaccta |
594 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33994800 |
aacagcgagacggaatatttggaccgtcggatctcaaatcaatgatcatgataacataattaacagcagagaatattagataaggttcacttgccaccta |
33994701 |
T |
|
| Q |
595 |
taatcttaaggactaaaagtttaagaaatgtaacaaaataaattgaaacaataagcaatagtaaataatagtgatgatgt |
674 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33994700 |
taatcttaaggactaaaagtttaagaaatgtaacaaaataaattgaaacaataagcaatagtaaataatagtgatgatgt |
33994621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 311 - 454
Target Start/End: Complemental strand, 33986552 - 33986409
Alignment:
| Q |
311 |
tgtaaatgataaatgaattaccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttaca |
410 |
Q |
| |
|
|||||||| |||| |||||||||||| || |||||||||| ||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| |
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| T |
33986552 |
tgtaaatgtgaaattaattaccttaacttgtaaatggagaagattaccaagcaaaactccaataggaatcccaattaggtaataggagcctatgtttaca |
33986453 |
T |
|
| Q |
411 |
tatgctacaacactttgccacccagctccaacagaaacacctat |
454 |
Q |
| |
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|||||| |||| |||||||| ||||||||||||| ||| ||||| |
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| T |
33986452 |
tatgctgcaacgctttgccagccagctccaacagcaactcctat |
33986409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 34017346 - 34017274
Alignment:
| Q |
369 |
ccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaa |
441 |
Q |
| |
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|||| ||||||||| || | |||||| || |||| ||| ||||||||||||| |||||||||||| ||||||| |
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| T |
34017346 |
ccaacaggaatacctatgatgtaataacaacctaggttcacatatgctacaatactttgccaccctgctccaa |
34017274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 34006852 - 34006763
Alignment:
| Q |
329 |
taccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctac |
418 |
Q |
| |
|
|||||| || ||| |||||| |||||||||||| || | |||| ||||||||| || | |||||| || |||||||| ||||||||||| |
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| T |
34006852 |
taccttgacttgccaatggataatattaccaagaacaatcccaacaggaatacctatgatgtaataacaacctatgttcacatatgctac |
34006763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 356 - 455
Target Start/End: Original strand, 9234463 - 9234562
Alignment:
| Q |
356 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctatt |
455 |
Q |
| |
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||||| ||| ||||||| |||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
9234463 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatatgctacaatcctttgccacccagctccaacagaaactcctatt |
9234562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 356 - 455
Target Start/End: Original strand, 9214697 - 9214796
Alignment:
| Q |
356 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatatgctacaacactttgccacccagctccaacagaaacacctatt |
455 |
Q |
| |
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||||| ||| ||||||| |||||||||||| |||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
9214697 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatatgctacaatgctttgccatccagctccaacagaaactcctatt |
9214796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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