View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_14 (Length: 267)
Name: NF1691_low_14
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_14 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 23348375 - 23348613
Alignment:
| Q |
18 |
aggacatgctacttgccaacttttacgacatcaagaatcgaattaagcacatgaaacatgcattttcaaccttcttttaaacgtattatacagnnnnnnn |
117 |
Q |
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| T |
23348375 |
aggacatgctacttgccaacttttacgacatcaagaatcgaattaagcacatgaaacatgtattttcaaccttcttttcaacgtattatacagaaaaaaa |
23348474 |
T |
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| Q |
118 |
ttagaaggaaaacagaatcaagataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataatgtcaaatctttgactaccaat |
217 |
Q |
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| T |
23348475 |
ttagaaggaaaacagaatcaagataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataatgtcaaatctttgactaccaat |
23348574 |
T |
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| Q |
218 |
gattatctacagcttccttgccattttttacagcttcat |
256 |
Q |
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| T |
23348575 |
gattatctacagcttccttgccattttttacagcttcat |
23348613 |
T |
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Back To:
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Target: scaffold0022 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 65 - 256
Target Start/End: Complemental strand, 160429 - 160236
Alignment:
| Q |
65 |
cacatgaaacatgcattttcaaccttcttttaaacgtattatacagnnnnnnnttagaaggaaaacagaatcaagataaatatgtacctcaatcccatac |
164 |
Q |
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| T |
160429 |
cacatgaaacatgcattttcatccttcttttcaacgtattatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattc |
160330 |
T |
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| Q |
165 |
atgataggcatttccttatccacgagaataatgtcaaatctttgactac--caatgattatctacagcttccttgccattttttacagcttcat |
256 |
Q |
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| T |
160329 |
atgataggaatttccttatccacgagagtaatgtcaaatcttttaccactggaatgaatacctacaacttccttaccattttttacagcttcat |
160236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 160661 - 160615
Alignment:
| Q |
18 |
aggacatgctacttgccaacttttacgacatcaagaatcgaattaag |
64 |
Q |
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| T |
160661 |
aggacatactatttgccagcttttacgacatcaagaatcgaattaag |
160615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 39635897 - 39636014
Alignment:
| Q |
140 |
ataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataatgtcaaatctttgac--taccaatgattatctacagcttccttg |
237 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||| ||||||||||||| || |
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| T |
39635897 |
ataactatgtacctcaatcccattcatgataggcatttccttatccatgagaataatatcaaatctttgaccattgcaatggatatctacagcttcttta |
39635996 |
T |
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| Q |
238 |
ccattttttacagcttca |
255 |
Q |
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| T |
39635997 |
ccattttttacagcttca |
39636014 |
T |
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