View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_20 (Length: 236)
Name: NF1691_low_20
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 37809677 - 37809838
Alignment:
| Q |
61 |
actcttttctgactgattttgcaactgcacaacaatccttatgcactaaaaggaaccaaaacgaaaagaaaccaacaaggattgcagaatttaaaaacca |
160 |
Q |
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| T |
37809677 |
actcttttttgactgattctgagactgcacgacattccttatgcactaaaaggaaccaaaatgaaaagaaaccaacaacgattgcaaaatttaaaaacca |
37809776 |
T |
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| Q |
161 |
aactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttt |
222 |
Q |
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| T |
37809777 |
aactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttt |
37809838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 37646264 - 37646160
Alignment:
| Q |
118 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
217 |
Q |
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| T |
37646264 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
37646165 |
T |
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| Q |
218 |
ctttt |
222 |
Q |
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||||| |
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| T |
37646164 |
ctttt |
37646160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 37814579 - 37814683
Alignment:
| Q |
118 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
217 |
Q |
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| T |
37814579 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
37814678 |
T |
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| Q |
218 |
ctttt |
222 |
Q |
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||||| |
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| T |
37814679 |
ctttt |
37814683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 37635919 - 37635762
Alignment:
| Q |
61 |
actcttttctgactgattttgcaactgcacaacaatccttatgcactaaaaggaacc---aaaacgaaaagaaaccaacaaggattgcagaatttaaaaa |
157 |
Q |
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|||||||| ||||||| | ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37635919 |
actcttttgtgactgaatctgcaactgcacgacattccttatgcactaaaaggaaccaaaaaaacgaaaagaaaccaacagagattgcagaatttaaaaa |
37635820 |
T |
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| Q |
158 |
ccaaactacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
217 |
Q |
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|| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
37635819 |
cccaactac--gtatagaactatagatgtcaaggtaaagaaaattaagaagtaaaggtac |
37635762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 37814505 - 37814547
Alignment:
| Q |
3 |
ttaatcaaactctcttagaacactttcgatccctagtatcaca |
45 |
Q |
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| T |
37814505 |
ttaatcaaactctctgagaacactttcaatccctagtatcaca |
37814547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 37646338 - 37646296
Alignment:
| Q |
3 |
ttaatcaaactctcttagaacactttcgatccctagtatcaca |
45 |
Q |
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||||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
37646338 |
ttaatcaaactctctgagaacactttcaatccatagtatcaca |
37646296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 37635990 - 37635950
Alignment:
| Q |
22 |
acactttcgatccctagtatcacagtttggttaaccaatac |
62 |
Q |
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| T |
37635990 |
acactttggatccctagtatcatagtctggttaaccaatac |
37635950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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