View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1691_low_3 (Length: 525)
Name: NF1691_low_3
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 48883761 - 48883251
Alignment:
| Q |
1 |
cattccttgtaactatgagtcaattgtgtcatattttcaggtcaagtaaccaagtaaccatttttctttgcataagaaaccttttctttaataacttcca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883761 |
cattacttgtaactatgagtcaattgtgtcatattttcaggtcaagtaaccaagtaaccatttttctttgcataagaaaccttttctttaataacttcca |
48883662 |
T |
|
| Q |
101 |
catcatcaaaattaacccaagtagatgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcaccagagccgctaatgta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
48883661 |
catcatcaaaatta-cccaagtagatgcaacagtgaaataattcaccacaaatgtctcattataatatgaaactactccatcatcagagccgctaatgta |
48883563 |
T |
|
| Q |
201 |
atttgttatcgacttataacccattgaaccatccattgtaatagcaggaccagaagttggtctaccaacaccaccttcttctggcttcacaggtgtccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |
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|
| T |
48883562 |
atttgttatcgacttataacccattgaaccatccattgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccat |
48883463 |
T |
|
| Q |
301 |
gcaaatccatgataaggcagaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatg |
400 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883462 |
gcatatccatgataaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatg |
48883363 |
T |
|
| Q |
401 |
aaccatataaaggtgcatgaaaacgtgtgacattgtcccttttaggaagatagtaagggaatctgaaggtttaagataataacctgtcatcagcaacact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883362 |
aaccatataaaggtgcatgaaaacgtgtgacattgtcccttttaggaagatagtaagggaatctgaaggtttaagataataacctgtcatcagcaacact |
48883263 |
T |
|
| Q |
501 |
aattctgatctt |
512 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48883262 |
aattctgatctt |
48883251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 46 - 456
Target Start/End: Original strand, 48478565 - 48478976
Alignment:
| Q |
46 |
gtaaccaagtaa-ccatttttctttgcataagaaaccttttctttaataacttccacatcatcaaaattaacccaagtagatgcaacagtgaaataattc |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
48478565 |
gtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgtagattcaacagtgaaataattc |
48478664 |
T |
|
| Q |
145 |
accacaaatttctcattataatatgaaactactccatcaccagagccgctaatgtaatttgttatcgacttataacccattgaaccatccattgtaatag |
244 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||| |||| || |||||| || |||| |||||||| |||||||||||||||||||||||| |
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|
| T |
48478665 |
accacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccattgtaatag |
48478764 |
T |
|
| Q |
245 |
caggaccagaagttggtctaccaacaccaccttcttctggcttcacaggtgtccatgcaaatccatgataaggcagaccaattacaagtttgttagaaga |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48478765 |
caggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttgttagaaga |
48478864 |
T |
|
| Q |
345 |
aaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaaggtgcatgaaaacgtgtgacattgtccctttta |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48478865 |
aaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaaggtgcatgaaaacgtgtgacactgtccctttta |
48478964 |
T |
|
| Q |
445 |
ggaagatagtaa |
456 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48478965 |
ggaagatagtaa |
48478976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 46 - 456
Target Start/End: Original strand, 48470203 - 48470614
Alignment:
| Q |
46 |
gtaaccaagtaa-ccatttttctttgcataagaaaccttttctttaataacttccacatcatcaaaattaacccaagtagatgcaacagtgaaataattc |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470203 |
gtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccaagtagatgcaacagtgaaataattc |
48470302 |
T |
|
| Q |
145 |
accacaaatttctcattataatatgaaactactccatcaccagagccgctaatgtaatttgttatcgacttataacccattgaaccatccattgtaatag |
244 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||| |||| ||||||||| || |||| |||||||| |||||||||||||||||||| || |
|
|
| T |
48470303 |
accacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctaatgtaactttttataaacttataagacattgaaccatccattgtaaaag |
48470402 |
T |
|
| Q |
245 |
caggaccagaagttggtctaccaacaccaccttcttctggcttcacaggtgtccatgcaaatccatgataaggcagaccaattacaagtttgttagaaga |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48470403 |
caggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcatatccatgataaggcaaaccaattacaagtttgttagaaga |
48470502 |
T |
|
| Q |
345 |
aaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaaggtgcatgaaaacgtgtgacattgtccctttta |
444 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
48470503 |
aaatcctctttttctccactctttaatgcctgaatcagtattttcccagtcagatgaaccgtataaagctgcatgaaaacgtgtgacactgtccctttta |
48470602 |
T |
|
| Q |
445 |
ggaagatagtaa |
456 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48470603 |
ggaagatagtaa |
48470614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 46 - 456
Target Start/End: Original strand, 48487031 - 48487445
Alignment:
| Q |
46 |
gtaaccaagtaa-ccatttttctttgcataagaaaccttttctttaataacttccacatcatcaaaattaacccaagtag---atgcaacagtgaaataa |
141 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||| |||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
48487031 |
gtaaccaagtaatccatttttctttgcataagatacttttactttaatagctttcacatcatcaaaattaacccaagtagtggatgcaacagtaaaataa |
48487130 |
T |
|
| Q |
142 |
ttcaccacaaatttctcattataatatgaaactactccatcaccagagccgctaatgtaatttgttatcgacttataacccattgaaccatccattgtaa |
241 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||||| |||||| ||| ||||| ||| || ||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
48487131 |
ttcaccacaaaagtatcattataacatgaaactactccgtcaccaaagcttctaatataactttttatcaacttataagccattgaaccatcctttgtaa |
48487230 |
T |
|
| Q |
242 |
tagcaggaccagaagttggtctaccaacaccaccttcttctggcttcacaggtgtccatgcaaatccatgataaggcagaccaattacaagtttgttaga |
341 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
48487231 |
tagcaggaccagaagttggtttaccaacaccaccttcacctggtttcacaagtgtccaagcaaatccatgataaggcaaaccaattacaagtttgtgaga |
48487330 |
T |
|
| Q |
342 |
agaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaaggtgcatgaaaacgtgtgacattgtccctt |
441 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| || || |||| || | ||||||| || |
|
|
| T |
48487331 |
agaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaagccgcgtggaaacccgtaaaattgtccttt |
48487430 |
T |
|
| Q |
442 |
ttaggaagatagtaa |
456 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48487431 |
ttaggaagatagtaa |
48487445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 48470673 - 48470731
Alignment:
| Q |
454 |
taagggaatctgaaggtttaagataataacctgtcatcagcaacactaattctgatctt |
512 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48470673 |
taagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatctt |
48470731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 48479035 - 48479093
Alignment:
| Q |
454 |
taagggaatctgaaggtttaagataataacctgtcatcagcaacactaattctgatctt |
512 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48479035 |
taagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatctt |
48479093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 48487508 - 48487557
Alignment:
| Q |
458 |
ggaatctgaaggtttaagataataacctgtcatcagcaacactaattctg |
507 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||| ||||| |||| |
|
|
| T |
48487508 |
ggaatctgaagctttaagataataacctgccatcaccaaaactaactctg |
48487557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 38817050 - 38816834
Alignment:
| Q |
46 |
gtaaccaagtaa-ccatttttctttgcataagaaaccttttctttaataacttccacatcatcaaaattaacccaagta------gatgcaacagtgaaa |
138 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
38817050 |
gtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgtactagtggatgcaacagtgaaa |
38816951 |
T |
|
| Q |
139 |
taattcaccacaaatttctcattataatatgaaactactccatcaccagagccgctaatgtaatttgttatcgacttataacccattgaaccatccattg |
238 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| || | || |||||||| ||| |||||||||||||| |
|
|
| T |
38816950 |
taattcaccacaaaagcgtcattataacatgaaactactccatcaccagagcttctaatgtaacttttcatatacttataagccactgaaccatccattg |
38816851 |
T |
|
| Q |
239 |
taatagcaggaccagaa |
255 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
38816850 |
taaaagcaggaccagaa |
38816834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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