View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_4 (Length: 425)
Name: NF1691_low_4
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_4 |
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| [»] scaffold0563 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 99 - 397
Target Start/End: Complemental strand, 37224777 - 37224475
Alignment:
| Q |
99 |
ctttgtaattaaaaacaaatgatgtttccaaacatcaataaaccactatccacattgtgt---tttttctttctgttcttttcttataagaagctgtaca |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | ||||||||||| | || ||||||| |||||||||| |
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| T |
37224777 |
ctttgtaattaaaaacaaatcatgtttccaaacatcaataaacaactatccacattttctgtttttttctttctatcattctcttatattaagctgtaca |
37224678 |
T |
|
| Q |
196 |
-caacaagtgcatagtagaatagtattaagtttcacattggaacttcttcatttcaatttgaatcatgttccacagcaagactcaactcagcgctacctg |
294 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
37224677 |
acagcaagtgcatagtagaatagtattaagtttcacattggaacttcttcatttcaatttgaatcatgctccacagcaagactcaactctgcgctacctg |
37224578 |
T |
|
| Q |
295 |
tcctactttcatcatcaatagtagaattgagtttcataagagaaaccacaacatctctcatttttggacgttgtttcggatctctgtttacgcaagcctt |
394 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
37224577 |
tcctactttcatcatcaatagtataattcagtttcataagagaaaccacaaggtctctcatttttggacgttgtttcggatctcggtttatgcaagcctt |
37224478 |
T |
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| Q |
395 |
ggc |
397 |
Q |
| |
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||| |
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| T |
37224477 |
ggc |
37224475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 158 - 397
Target Start/End: Complemental strand, 37234030 - 37233790
Alignment:
| Q |
158 |
ttttttctttctgttcttttcttataagaagctgtaca-caacaagtgcatagtagaatagtattaagtttcacattggaacttcttcatttcaatttga |
256 |
Q |
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|||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37234030 |
ttttttctttctgttcttctcttatattaagctatacaacaacaagtgcatagtagaatagtattaagtttcacattggaacttcttcatttcaatttga |
37233931 |
T |
|
| Q |
257 |
atcatgttccacagcaagactcaactcagcgctacctgtcctactttcatcatcaatagtagaattgagtttcataagagaaaccacaacatctctcatt |
356 |
Q |
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|||||| |||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
37233930 |
atcatgctccacatcaagactcaactctgcgctatctgtcctactttcatcatcaatagtagaaattagtttcataagagaaaccacaacatctctcatt |
37233831 |
T |
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| Q |
357 |
tttggacgttgtttcggatctctgtttacgcaagccttggc |
397 |
Q |
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| T |
37233830 |
tttggacgttgtttcggatctcggtttatgcaagccttggc |
37233790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 37218874 - 37218765
Alignment:
| Q |
288 |
ctacctgtcctactttcatcatcaatagtagaattgagtttcataagagaaaccacaacatctctcatttttggacgttgtttcggatctctgtttacgc |
387 |
Q |
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|||||||| ||| ||| || |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |
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| T |
37218874 |
ctacctgtactatttttattatcaatagaagaattgagttccataagagaaaccacaacatctctcattgttggacgttgtttcggatctcgatttatgc |
37218775 |
T |
|
| Q |
388 |
aagccttggc |
397 |
Q |
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|||||||||| |
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| T |
37218774 |
aagccttggc |
37218765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 37384407 - 37384508
Alignment:
| Q |
296 |
cctactttcatcatcaatagtagaattgagtttcataagagaaaccacaacatctctcatttttggacgttgtttcggatctctgtttacgcaagccttg |
395 |
Q |
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||||||| |||||||||| |||||||| ||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||| ||||| ||||||| || |
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| T |
37384407 |
cctacttccatcatcaattgtagaattaagtgtcattagagaaaccacaacagctctcattgttggacgacgtttcggatctcggtttaagcaagccctg |
37384506 |
T |
|
| Q |
396 |
gc |
397 |
Q |
| |
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|| |
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| T |
37384507 |
gc |
37384508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 37224864 - 37224809
Alignment:
| Q |
32 |
aagacaagtgaagtaattgatccaagatagtaaagttttgctgctagctaacattg |
87 |
Q |
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||||||||||||||||||||||||| || || |||| |||| ||||||||||||| |
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| T |
37224864 |
aagacaagtgaagtaattgatccaaaatggtgtagttctgctcctagctaacattg |
37224809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 33596776 - 33596820
Alignment:
| Q |
16 |
atgcttagacaagaacaagacaagtgaagtaattgatccaagata |
60 |
Q |
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||||| ||||||||||||||||| |||| ||| |||||||||||| |
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| T |
33596776 |
atgctaagacaagaacaagacaaatgaaataaatgatccaagata |
33596820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 45007718 - 45007634
Alignment:
| Q |
55 |
aagatagtaaagttttgctgctagctaacattgtcctacactttctttgtaattaaaaacaaatgatgtttccaaacatcaataa |
139 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
45007718 |
aagatagtatagttttgctgctagctaacattgttctacactttcttcgtaattaaaaacaaatcatgtttccaaacatcaataa |
45007634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0563
Description:
Target: scaffold0563; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 3850 - 3912
Alignment:
| Q |
293 |
tgtcctactttcatcatcaatagtagaattgagtttcataagagaaaccacaacatctctcatt |
356 |
Q |
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||||||||||||||||||| || | ||||||||||||||||| |||||| |||| |||||||| |
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| T |
3850 |
tgtcctactttcatcatca-taccataattgagtttcataagataaaccataacaactctcatt |
3912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 15828672 - 15828720
Alignment:
| Q |
92 |
acactttctttgtaattaaaaacaaatgatgtttccaaacatcaataaa |
140 |
Q |
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||||||||||||||||||||||||||| |||| | |||| |||||||| |
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| T |
15828672 |
acactttctttgtaattaaaaacaaatcatgtatgcaaatttcaataaa |
15828720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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