View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_5 (Length: 423)
Name: NF1691_low_5
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 38189603 - 38189302
Alignment:
| Q |
2 |
cttgtagtgtccggtgaatgtgaagttgcttttaccccttagggtttcatggatttaaaactctctgtataattgtttagcgagttgcttttgcctcttt |
101 |
Q |
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| T |
38189603 |
cttgtagtgtccggtgaatgtgaagttgcttttgccccttagggtttcatggatttaaaactctctgtataattgtttagcgagttgcttttgcctcttt |
38189504 |
T |
|
| Q |
102 |
gtaatttaaattttaatttgattatgtacttttcaattcgccttatgccttagttagacggtttgtgcatgtttattaaatttttatggtggtggattgc |
201 |
Q |
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| T |
38189503 |
gtaatttaaatttaaatttgattatgtacttttcaattcgccttatgccttagttagacggtttgtgcatgtttattaaatttttatggtggtggattgc |
38189404 |
T |
|
| Q |
202 |
agcgacattcaagtccagggaggatcatcaaaaacagattcagcttgaggaagcctgtaaatccgggcttgcccctgctgagtttgatgaagatggaaag |
301 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189403 |
agcgacattcaggtccagggaggatcatcaaaaacagattcagcttgaggaagcctgtaaatccgggcttgcccctgctgagtttgatgaagatggaaag |
38189304 |
T |
|
| Q |
302 |
ga |
303 |
Q |
| |
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|| |
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| T |
38189303 |
ga |
38189302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 38189145 - 38189023
Alignment:
| Q |
298 |
aaaggagacggatatctcatcccaatagtacctcatcaaggagctctagagttactaaaacttttcaggccaacaaggataggaaaggtgtatgtgagaa |
397 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
38189145 |
aaaggaaacggatatctcatcccaataatacctcatcaaggagctctagagttactaaaacttttcaggccagcaagtataggaaaggtgcatgtgagaa |
38189046 |
T |
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| Q |
398 |
gaaagttctctctttcactgtta |
420 |
Q |
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| T |
38189045 |
gtaagttatctctttcactgtta |
38189023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 38920529 - 38920669
Alignment:
| Q |
162 |
gtttgtgcatgtttattaaatttttatggtggtggattgcagcgacattcaagtccagggaggatcatcaaaaacagattcagcttgaggaagcctgtaa |
261 |
Q |
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|||| |||||||| ||||||||| ||| |||||||||||| | ||||||| ||||| |||||||||| |||||| ||| ||||||||||||| |||| |
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| T |
38920529 |
gtttctgcatgttaattaaatttgtattc-ggtggattgcagtggcattcaaatccagagaggatcatcgaaaacaaattgagcttgaggaagctcgtaa |
38920627 |
T |
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| Q |
262 |
atccgggcttgcccctgctgagtttgatgaagatggaaagga |
303 |
Q |
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| T |
38920628 |
agccggacttgcacctgctgaggttgatgaagatggcaagga |
38920669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 38921573 - 38921637
Alignment:
| Q |
352 |
ctaaaacttttcaggccaacaaggataggaaaggtgtatgtgagaagaaagttctctctttcact |
416 |
Q |
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||||||||||||||||| | ||| |||||||||||| |||||||||| |||| ||||||||||| |
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| T |
38921573 |
ctaaaacttttcaggcccagaagtataggaaaggtgcatgtgagaagtaagtgatctctttcact |
38921637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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