View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_9 (Length: 342)
Name: NF1691_low_9
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 38188670 - 38188995
Alignment:
| Q |
17 |
acttataaacctaatgagcagtgcaaagtagatgcaactcaattcaaatatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaa |
116 |
Q |
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| T |
38188670 |
acttataaacctaatgagcagtgcaaagtagatgcaactcaattcaaatatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaa |
38188769 |
T |
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| Q |
117 |
tccaagcttgtaaactaactagaagaatttagttaaaagattttgtgcatgttcacttgtattagtttgacagtgtttacaaacaaggcgagtgcacaat |
216 |
Q |
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| T |
38188770 |
tccaagcttgtaaactaactagaagaatttagttaaaagactttgtgcatgttcacttgtattagtttgacagtgtttacaaacaaggcgagtgcacaat |
38188869 |
T |
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| Q |
217 |
tttcataaactcaaaagagagttcaacaactattgaaacaggcataaacacagtccgagacagatgttaccaaatactaagtctcaatttcttattaagt |
316 |
Q |
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| T |
38188870 |
tttcataaactcaaaagagagttcgacaactattgagacaggcataaacacagtccgagacagatgttaccaaatactaagtctcaatttcttattaagt |
38188969 |
T |
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| Q |
317 |
tgatagacaacaagcgtccatcacat |
342 |
Q |
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| T |
38188970 |
tgatagacaagaagcgtccatcacat |
38188995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 38921960 - 38921843
Alignment:
| Q |
64 |
atatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaactagaagaatttagttaaaagattttgtg |
163 |
Q |
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|||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| || ||||||||||| | | |||||||||||||||||||||| |
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| T |
38921960 |
atatccaacaaagtcagtcaaaaggtcattttaacacaaaaaccatgtattaatccaggcgtgtaaactaacaacacaaatttagttaaaagattttgtg |
38921861 |
T |
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| Q |
164 |
catgttcacttgtattag |
181 |
Q |
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| T |
38921860 |
caagttcaattgtattag |
38921843 |
T |
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