View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692-Insertion-1 (Length: 294)
Name: NF1692-Insertion-1
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 122 - 294
Target Start/End: Complemental strand, 5195675 - 5195503
Alignment:
| Q |
122 |
gaggcaccggcatataggacgatatacaacttttgctttgttaaatagatgtcaccagaaggtaaattctaccacaacattgcattagttgttgactgat |
221 |
Q |
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| T |
5195675 |
gaggcactggcatataggacgatatacaacttttgctttgttaaatagatgtcactagaagggaaattctaccacaacattgcattagttgttgactgat |
5195576 |
T |
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| Q |
222 |
atatagaattggaaaaagctcttgcttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagt |
294 |
Q |
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| T |
5195575 |
atatagaattggaaaaagctcttacttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagt |
5195503 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 5195761 - 5195706
Alignment:
| Q |
7 |
atatagcagtgactaattttatcttttgtttgttatcttcgttgtcttaaatatgt |
62 |
Q |
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| T |
5195761 |
atatagcagtgactaattttatcttttgtttgttatcttcgttgtcttaaatatgt |
5195706 |
T |
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