View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1692-Insertion-10 (Length: 222)
Name: NF1692-Insertion-10
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692-Insertion-10 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 28982195 - 28981980
Alignment:
| Q |
7 |
attaaccacttcaatttaatggaagaaagtgtaacaggttgttccggcaagcacctaaaaaatgggaaaacatctccaaagtataacttaatgggacaga |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28982195 |
attaaccacttccatttaatggaagaaagtgtaacaggttgttccggcaagcacctaaaaaatgggaaaacatctccaaagtataacttaatgggacaga |
28982096 |
T |
|
| Q |
107 |
taaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgttattctaattggtttggattggatggcctcgaacatccccatcactatttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28982095 |
taaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgttattctaattggtttggattggatggcctcaaacatccccatcactatttt |
28981996 |
T |
|
| Q |
207 |
aaatgagacagataga |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28981995 |
aaatgagacagataga |
28981980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 28966489 - 28966332
Alignment:
| Q |
60 |
cctaaaaaatgggaaaacatctccaaagtataact---taatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgtt |
156 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||||||||| |||| || |
|
|
| T |
28966489 |
cctaaaaaatgggaaaacatctccaatgtataactaattaatgggacaaataaaaacaaacaaaagaaatggtagggaaaagtttagagttattcatatt |
28966390 |
T |
|
| Q |
157 |
attctaattggtttggattggatggcctcgaacatccccatcactattttaaatgagacagat |
219 |
Q |
| |
|
||| ||||||| ||| | ||||||| |||||| | |||||||||||| ||||||||||| |
|
|
| T |
28966389 |
attttaattgg-----atttggtggcctcaaacatctctatcactattttacatgagacagat |
28966332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 28942734 - 28942619
Alignment:
| Q |
59 |
acctaaaaaatgggaaaacatctccaaagtataact---taatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgt |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||| | |
|
|
| T |
28942734 |
acctaaaaaataggaaaacatctccaaagttttactgaataatgggacaaataaaaacaaacaaaagaaatggtaggaaaaagtttagagttattcatat |
28942635 |
T |
|
| Q |
156 |
tattctaattggtttg |
171 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
28942634 |
tactctaattggtttg |
28942619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University