View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1692-Insertion-4 (Length: 719)

Name: NF1692-Insertion-4
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1692-Insertion-4
NF1692-Insertion-4
[»] chr6 (4 HSPs)
chr6 (6-719)||(11224555-11225263)
chr6 (95-379)||(11225243-11225528)
chr6 (221-380)||(11225433-11225592)
chr6 (6-112)||(11225347-11225454)


Alignment Details
Target: chr6 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 6 - 719
Target Start/End: Complemental strand, 11225263 - 11224555
Alignment:
Q  6 caaaagtatatttacagctatctttttctatcagttttcataatccttttcaattaaacaaccaacttacattcaggtgcacatcaaacatcagttcgca 105  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11225263 caaaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttacattcaggtacacatcaaacattagttcgca 11225164  T
Q  106 gaattttatcaacaatgtgtaactcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttttcaatcaattt 204  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11225163 gaattt-atcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaattt 11225065  T
Q  205 gaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaacaatcaattcgcagaattttgattttgtaatcagttcacagaatatttc 304  Q
    | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  11225064 gcagaatctttttcaattaaacaatcagcttacaatcaggtaaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatttc 11224966  T
Q  305 aacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctatagcttttccttcttcgttcacataa 404  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||    
T  11224965 aacaatgtgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataa 11224866  T
Q  405 tttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11224865 tttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaag 11224766  T
Q  505 aactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccaacatgtg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11224765 aactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtg 11224666  T
Q  605 ggactttaagcttcttacgattttcggtattcttctcactttgttgctacaattttaaactatgatagttaatacttgtatgacaaagttttttagaata 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    |||||||||| ||||||||||||||    
T  11224665 ggactttaagcttcttacgattttcggtattcttctcactttgtttcaacaattttaaactatgatagtta----ttgtatgacatagttttttagaata 11224570  T
Q  705 tgagattgtgtaaat 719  Q
    |||||||||||||||    
T  11224569 tgagattgtgtaaat 11224555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 95 - 379
Target Start/End: Complemental strand, 11225528 - 11225243
Alignment:
Q  95 atcagttcgcagaattttatcaacaatgtgtaactcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttt 193  Q
    |||||||| ||||||||| |||| |||| ||||| ||| ||||||||| ||| ||| |||||| ||| ||| ||  |||||||||||||| | || ||||    
T  11225528 atcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtatacttacagctatatttt 11225429  T
Q  194 tcaatcaatttgaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaacaatcaattcgcagaattttgattttgtaatcagttca 293  Q
    |||||||| ||| |||||| |||| ||||||| ||||| |||||| |||| || |||||||||||||| ||| || ||||||||||||  ||||||||      
T  11225428 tcaatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttc 11225329  T
Q  294 cagaatatt-tcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctat 379  Q
    |||||| || ||||||||||| ||| | |||| |||||||| ||||||||||||| | ||||||||||||| |||| ||| ||||||    
T  11225328 cagaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaa-tcaacacacccaaaagtatatttacagctat 11225243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 380
Target Start/End: Complemental strand, 11225592 - 11225433
Alignment:
Q  221 ttaaacaatcaacttacaatcagataaacattaaacaatcaattcgcagaattttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactc 319  Q
    |||||||||||||||||||||||| | |||| ||||||||| |||||| ||||||||||||  ||||||||| |||||| || |||| |||| ||||| |    
T  11225592 ttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacac 11225493  T
Q  320 gtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctata 380  Q
     | ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||    
T  11225492 ttgtactacatgcacaacatttaatcaac-caacacacccaaaagtatacttacagctata 11225433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 11225454 - 11225347
Alignment:
Q  6 caaaagtatatttacagctatctttttctatcagttttcataatccttttcaattaaacaaccaacttacattcaggtgcacatcaaac-atcagttcgc 104  Q
    |||||||||| |||||||||| |||||| ||||  || || ||||||||| ||||||| || || ||||||||||||| ||||| |||| |||||||| |    
T  11225454 caaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaacaatcagttcac 11225355  T
Q  105 agaatttt 112  Q
    | ||||||    
T  11225354 aaaatttt 11225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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