View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1692-Insertion-7 (Length: 779)

Name: NF1692-Insertion-7
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1692-Insertion-7
NF1692-Insertion-7
[»] chr5 (2 HSPs)
chr5 (116-776)||(504855-505514)
chr5 (7-87)||(504748-504828)
[»] chr7 (2 HSPs)
chr7 (535-754)||(16702099-16702318)
chr7 (535-754)||(17676335-17676554)


Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 116 - 776
Target Start/End: Original strand, 504855 - 505514
Alignment:
Q  116 gagacagcatcaagaaatcataccaattttctctattaatttactactaactgaatggtacattgacacaaatactctcttgttctctgtataatgttct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  504855 gagacagcatcaagaaatcataccaattttctctattaatttactactaactgaatggtacattgacacaaatactctcttgttctctgtataatgttct 504954  T
Q  216 ctcaagttctcacatataacatgaccaaaa-ggtgtttgaatgctatattccacaacaatgctatgctaactatatatgcactacatagttcctttatgg 314  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  504955 ctcaagttctcacatataacatgaccaaaaaggtgtttgaatactatattccacaataatgctatgctaactatatatgcactacatagttcctttatgg 505054  T
Q  315 aatttagatttaggagtatcccacgttcacgcattttggacatcgatggatatttgatcaagatcaagtacnnnnnnnntgcaaatttcaattttatgat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  505055 aatttagatttaggagtatcccacgttcacgcattttggacatcgatggatatttgatcaagatcaagtacaaaaaa--tgcaaatttcaattttatgat 505152  T
Q  415 ttaaaataggagtttaaatatgaaccatatgattttgatcgaacgaccactaattttacgactgcatgaatgtggggaatctctgaatgtagaagagtcg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||    
T  505153 ttaaaataggagtttaaatatgaaccatatgattttgatcgaacggccactaatgttacgactgcatgaatgtggggaatctctgaatatagaggagtcg 505252  T
Q  515 gatcctaatttatgataaacctaggtaggcctattttggaacctaacttctgaacatcatcacgaacttgttgtctatattctttaaagctgaatttgcg 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505253 gatcctaatttatgataaacctaggtaggcctattttggaacctaacttctgaacatcatcacgaacttgttgtctatattctttaaagctgaatttgcg 505352  T
Q  615 gtatacagagggctctttgcaactctcaatcatggtctcgtttggagggcataagaaatacgcaacagaaaacctttctactcttgggtttgtcacaact 714  Q
    ||||| |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  505353 gtatatagagggctctttgcaactctcaatcatggtgtcatttgaagggcataagaaatacgcaacagagaacctttctactcttgggtttgtcacaact 505452  T
Q  715 cgatgctcaacactcttatacactccattgctccaagccttcatgcattacatcattaacaa 776  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505453 cgatgctcaacactcttatacactccattgctccaagccttcatgcattacatcattaacaa 505514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 504748 - 504828
Alignment:
Q  7 aacaatctcacaatttagaaacaagtttgaagaagacaaaatagtagcaactgaaccttttattatagcaatttgtcgctc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  504748 aacaatctcacaatttagaaacaagtttgaagaagacaaaatagtagcaactgaaccttttattatagcaatttgttgctc 504828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 535 - 754
Target Start/End: Original strand, 16702099 - 16702318
Alignment:
Q  535 ctaggtaggcctattttggaacctaacttctgaacatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatacagagggctctttgc 634  Q
    |||||||||||||||||||  || ||||||||||||||||| ||||||||||| | ||||||||  ||||| || |    ||| | ||| |||| |||||    
T  16702099 ctaggtaggcctattttggtccccaacttctgaacatcatctcgaacttgttgccgatattcttggaagctaaactctttgtaaagagatggctttttgc 16702198  T
Q  635 aactctcaatcatggtctcgtttggagggcataagaaatacgcaacagaaaacctttctactcttgggtttgtcacaactcgatgctcaacactcttata 734  Q
    | ||||| ||||   |||| |||| |||||| ||||||||||| | ||| |||||||| ||| |||| ||||| ||||||||||||||||||||||| ||    
T  16702199 agctctctatcacactctcatttgaagggcacaagaaatacgccatagagaacctttcaacttttggatttgtaacaactcgatgctcaacactcttgta 16702298  T
Q  735 cactccattgctccaagcct 754  Q
     | |||||| ||||||||||    
T  16702299 aagtccattactccaagcct 16702318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 535 - 754
Target Start/End: Original strand, 17676335 - 17676554
Alignment:
Q  535 ctaggtaggcctattttggaacctaacttctgaacatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatacagagggctctttgc 634  Q
    |||||||||||||||||||  || ||||||||||||||||| ||||||||||| | ||||||||  ||||| || |    ||| | ||| |||| |||||    
T  17676335 ctaggtaggcctattttggtccccaacttctgaacatcatctcgaacttgttgccgatattcttggaagctaaactctttgtaaagagatggctttttgc 17676434  T
Q  635 aactctcaatcatggtctcgtttggagggcataagaaatacgcaacagaaaacctttctactcttgggtttgtcacaactcgatgctcaacactcttata 734  Q
    | ||||| ||||   |||| |||| |||||| ||||||||||| | ||| |||||||| ||| |||| ||||| ||||||||||||||||||||||| ||    
T  17676435 agctctctatcacactctcatttgaagggcacaagaaatacgccatagagaacctttcaacttttggatttgtaacaactcgatgctcaacactcttgta 17676534  T
Q  735 cactccattgctccaagcct 754  Q
     | |||||| ||||||||||    
T  17676535 aagtccattactccaagcct 17676554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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