View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692-Insertion-8 (Length: 426)
Name: NF1692-Insertion-8
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Original strand, 34519522 - 34519898
Alignment:
| Q |
6 |
caattgcatcataaacaaaccgattaaagaaaatgtgtttgaactacttgccgtatcaatatgttttgtatagaagatagattaaaatcctaataaacaa |
105 |
Q |
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| T |
34519522 |
caattgcatcataaacaaaccgattaaagaaaatgtgtttgaactacttgccatatcaatatgttttgtatagaagatagattaaaatcctaataaacaa |
34519621 |
T |
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| Q |
106 |
gcattgaacattgatggaagattgatataatgtctctctattttacagggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattc |
205 |
Q |
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| T |
34519622 |
gcattgaacattgatggaagattgatataatgtctctctattttacagggatcattagctcatgaaggtctgggccctgtttcttggtggtgatgaattc |
34519721 |
T |
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| Q |
206 |
attccctggttttattcattttcaagattatgcttttagaagaaattggtcctttgttttgcttcaaaataagc--aaacaatagaagaaaattaatcat |
303 |
Q |
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| T |
34519722 |
attccctggttttattcattttcaagattgtgcttttagaagaaattggtcctttgttttgcttcaaaataagcaaaaacaatagaagaaaattaatcat |
34519821 |
T |
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| Q |
304 |
ttttgcttattaggatagaagaaattaatggtttggtcaagcccttgtggacatctcttaaaaacatgcaacatgat |
380 |
Q |
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| T |
34519822 |
ttttgcttattaggatagaagaaattaatggtttggtcaagcccttgtggacatctcttcaaaacatgcaacatgat |
34519898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 30739863 - 30739961
Alignment:
| Q |
142 |
tctattttacagggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattatgctt |
240 |
Q |
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| T |
30739863 |
tctattttacagggatcattatatcatgaaggtttgggacctgtttcttggtggcaatgaattcattcccagcttttattcattttcaagattacgctt |
30739961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30739712 - 30739778
Alignment:
| Q |
8 |
attgcatcataaacaaaccgattaaagaaaatgtgtttgaactacttgccgtatcaatatgttttgt |
74 |
Q |
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| T |
30739712 |
attgcatcataaaaaaaccaattcaagaaatcgtgtatgaattacttgccatatcaatatcttttgt |
30739778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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