View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1692-Insertion-9 (Length: 353)
Name: NF1692-Insertion-9
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692-Insertion-9 |
 | |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0576 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 20264170 - 20264515
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20264170 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
20264269 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20264270 |
aagctatagagcctttcttttccatcattctttctcccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
20264369 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20264370 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaacctagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
20264469 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20264470 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
20264515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 3906 - 4251
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3906 |
atttgtttgcatcttgcagcaatatcactacttgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
4005 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4006 |
aagctctagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
4105 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
4106 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtagct |
4205 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4206 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
4251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 28658002 - 28658347
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28658002 |
atttgtttgcatcttgcaacaatatcactagtcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
28658101 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28658102 |
aagctatagagcctttcttttccatcattctttctcccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
28658201 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28658202 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaacctagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
28658301 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658302 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
28658347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 3733474 - 3733800
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3733474 |
atttgtttgcatattgcagcaatatcactactcgttgtagtgcatactttgg-------------------aaatgtgtctttctcattcactcacacca |
3733554 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3733555 |
aagctctagagccttccttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
3733654 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
3733655 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaatcaaaggagaaagtgagtttacatatgtgtagct |
3733754 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3733755 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
3733800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 2752621 - 2752295
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2752621 |
atttgtttgcatattgcagcaatatcactactcgttgtagtgcatactttgga-------------------aatgtgtctttctcattcactcacacca |
2752541 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2752540 |
aagctctagagccttccttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
2752441 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
2752440 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaatcaaaggagaaagtgagtttacatatgtgtagct |
2752341 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2752340 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
2752295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 15358941 - 15359267
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtcttggaaatgtgtctttctcattcactcacacca |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15358941 |
atttgtttgcatattgcagcaatatcactactcgttgtagtgcatactttgg-------------------aaatgtgtctttctcattcactcacacca |
15359021 |
T |
|
| Q |
108 |
aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgattat |
207 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15359022 |
aagctctagagccttccttttccatcattctttctgccatatttattggagaggttagaatgttattcttttctttttcctgcaaattgtcattgcttat |
15359121 |
T |
|
| Q |
208 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaattaaaggagagagtgagtttacatatgtgtggct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
15359122 |
tgtaattagtctgcagtaaatttgatgataattgataagtatgtatcaaactagtaagcttttaaatcaaaggagaaagtgagtttacatatgtgtagct |
15359221 |
T |
|
| Q |
308 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359222 |
gaaattggtctttggcctcttttaagttgaccactatttctattta |
15359267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 248
Target Start/End: Original strand, 30034261 - 30034442
Alignment:
| Q |
71 |
agtcttggaaatgtgtctttctcattcactcacacca---aagctatagagcctttcttttccatcattctttctgccatatttattggagaggttagaa |
167 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||| || ||||| ||||| ||||||||| |||| ||||||||||| || ||||| |||||| || |
|
|
| T |
30034261 |
agtcttggaaaggtgtctgtttcattcactcacatcattaaagctgcagagcttttcttttctgtcatcctttctgccatgttccttggaaaggttataa |
30034360 |
T |
|
| Q |
168 |
tgttattcttttctttttcctgcaaattgtcattgattattgtaattagt--ctgcagtaaatttgatgataattgataagta |
248 |
Q |
| |
|
|| |||||||||||||||||| ||| || ||||| |||| ||||| ||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
30034361 |
tgctattcttttctttttccttcaacctgccattgcttatggtaatcagttgcagcagtaaatttgatgataa-tgataagta |
30034442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 30054039 - 30054135
Alignment:
| Q |
171 |
tattcttttctttttcctgcaaattgtcattgattattgtaattagt--ctgcagtaaatttgatgataattgataagtatgtatcaaactagtaag |
265 |
Q |
| |
|
|||| ||||||||| ||| ||| || ||||| |||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
30054039 |
tattattttcttttcccttcaacctgccattgcttattgtaattagttgcagcagtaaatttgatgataattgataattatgcatcaaactagtaag |
30054135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 289216 - 289150
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtc |
74 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
289216 |
atttgtttgcatcttgcagcgatatcaccactcgctgtcgtgcatactttggagaccaatattagtc |
289150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 18198581 - 18198647
Alignment:
| Q |
8 |
atttgtttgcatcttgcagcaatatcactactcgttgtagtgcatactttggagaccaatattagtc |
74 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
18198581 |
atttgtttgcatcttgcagcgatatcaccactcgctgtcgtgcatactttggagaccaatattagtc |
18198647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 260
Target Start/End: Original strand, 34910031 - 34910241
Alignment:
| Q |
62 |
accaatattagtcttggaaatgtgtctttctcattcactcacacca---aagctatagagcctttcttttccatcattctttctgccatatttattggag |
158 |
Q |
| |
|
|||||||| ||||||||||| ||| || | ||||| |||||||| | ||||||| |||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
34910031 |
accaatatgagtcttggaaaggtggctgtgtcatttactcacacaattaaagctatggagcctttcttttctgtcatcctttctgccatgttccttggag |
34910130 |
T |
|
| Q |
159 |
aggttagaatgtta---------ttcttttctttttcctgcaaattgtcattgattattgtaattagtctgcagtaaatttgatgataattgataagtat |
249 |
Q |
| |
|
|||||||||||||| | |||| |||||| |||| || ||||| ||| ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34910131 |
aggttagaatgttaattttttttgttttttgtttttctcgcaatatgccattggttaatgtaattagtctgcagtaaatttaatgacgattgataagtat |
34910230 |
T |
|
| Q |
250 |
gtatcaaacta |
260 |
Q |
| |
|
| |||||||| |
|
|
| T |
34910231 |
gcttcaaacta |
34910241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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